myRT

myRT report for GCA_004365955.1_ASM436595v1

Download annotations/find similar RTs

Seq: SODW01000001.1 (4663413 bp)
Overview 1 RT 1: 1268415-1275272 bp 2 RT 2: 1830497-1832902 bp 3 RT 3: 1837008-1840439 bp 4 RT 4: 2581500-2589664 bp 5 RT 5: 2957320-2963047 bp 6 RT 6: 3099418-3105474 bp Neighborhood of RT #1 [1268415, 1275283] protocat_pcaD DDE_Tnp_1 RVT-GII Tra8 INT_RitC_C_like RVT-GII GIIM Tra5 DUF2384 Neighborhood of RT #2 [1830497, 1832902] RVT-GII GIIM HicB Neighborhood of RT #3 [1837008, 1840609] RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #4 [2581500, 2589729] RVT-GII DDE_Tnp_1 Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM DUF4145 Neighborhood of RT #5 [2957320, 2963052] PRK03598 CcmA CcmA DDE_Tnp_IS66_C RVT-GII COG4446 DksA Neighborhood of RT #6 [3099418, 3105474] COG0610 DUF45 RVT-G2L Feature: gene Location: 1268415-1269230 bp Feature: domain Description: protocat_pcaD Location: 1268469-1269192 bp Feature: domain Description: protocat_pcaD Location: 1 268469-1 2691 92 bp Feature: gene Location: 1269519-1270814 bp Feature: domain Description: DDE_Tnp_1 Location: 1269870-1270536 bp Feature: domain Description: DDE_Tnp_1 Location: 1 269870-1 270536 bp Feature: gene Location: 1271075-1271518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271123-1271504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 271 1 23-1 271 504 bp Feature: gene Location: 1271609-1272601 bp Feature: domain Description: Tra8 Location: 1271618-1272557 bp Feature: domain Description: Tra8 Location: 1 271 61 8-1 272557 bp Feature: gene Location: 1272758-1272916 bp Feature: domain Description: INT_RitC_C_like Location: 1272761-1272839 bp Feature: domain Description: INT_RitC_C_like Location: 1 272761 -1 272839 bp Feature: gene Location: 1273038-1273691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273041-1273305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273041 -1 273305 bp Feature: domain Description: GIIM Note: maturase Location: 1273386-1273605 bp Feature: domain Description: GIIM Note: maturase Location: 1 273386-1 273605 bp Feature: gene Location: 1273678-1274391 bp Feature: domain Description: Tra5 Location: 1273801-1274236 bp Feature: domain Description: Tra5 Location: 1 273801 -1 274236 bp Feature: gene Location: 1275068-1275283 bp Feature: domain Description: DUF2384 Location: 1275128-1275272 bp Feature: domain Description: DUF2384 Location: 1 2751 28-1 275272 bp Feature: gene Location: 1830497-1830661 bp Feature: gene Location: 1830658-1830825 bp Feature: gene Location: 1830920-1832254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831199-1831817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 1 99-1 831 81 7 bp Feature: domain Description: GIIM Note: maturase Location: 1831859-1832087 bp Feature: domain Description: GIIM Note: maturase Location: 1 831 859-1 832087 bp Feature: gene Location: 1832332-1832658 bp Feature: domain Description: HicB Location: 1832521-1832653 bp Feature: domain Description: HicB Location: 1 832521 -1 832653 bp Feature: gene Location: 1832684-1832902 bp Feature: gene Location: 1837008-1837172 bp Feature: gene Location: 1837169-1837336 bp Feature: gene Location: 1837431-1838765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1837710-1838328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83771 0-1 838328 bp Feature: domain Description: GIIM Note: maturase Location: 1838370-1838598 bp Feature: domain Description: GIIM Note: maturase Location: 1 838370-1 838598 bp Feature: gene Location: 1838866-1839072 bp Feature: gene Location: 1839488-1840609 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1839521-1839773 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 839521 -1 839773 bp Feature: domain Description: Y2_Tnp Location: 1839899-1840439 bp Feature: domain Description: Y2_Tnp Location: 1 839899-1 840439 bp Feature: gene Location: 2581500-2581664 bp Feature: gene Location: 2581661-2581828 bp Feature: gene Location: 2581923-2582585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582202-2582583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582202-2582583 bp Feature: gene Location: 2582811-2584106 bp Feature: domain Description: DDE_Tnp_1 Location: 2583162-2583828 bp Feature: domain Description: DDE_Tnp_1 Location: 25831 62-2583828 bp Feature: gene Location: 2584369-2585379 bp Feature: domain Description: Phage_int_SAM_1 Location: 2584420-2584657 bp Feature: domain Description: Phage_int_SAM_1 Location: 2584420-2584657 bp Feature: domain Description: INT_RitC_C_like Location: 2584747-2585296 bp Feature: domain Description: INT_RitC_C_like Location: 2584747-2585296 bp Feature: gene Location: 2585366-2586352 bp Feature: domain Description: INT_RitB_C_like Location: 2585702-2586287 bp Feature: domain Description: INT_RitB_C_like Location: 2585702-2586287 bp Feature: gene Location: 2586352-2587584 bp Feature: domain Description: Phage_int_SAM_1 Location: 2586703-2586937 bp Feature: domain Description: Phage_int_SAM_1 Location: 2586703-2586937 bp Feature: domain Description: INT_RitA_C_like Location: 2587021-2587561 bp Feature: domain Description: INT_RitA_C_like Location: 2587021 -2587561 bp Feature: gene Location: 2587755-2588405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587758-2587968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587758-2587968 bp Feature: domain Description: GIIM Note: maturase Location: 2588010-2588238 bp Feature: domain Description: GIIM Note: maturase Location: 258801 0-2588238 bp Feature: gene Location: 2588482-2589012 bp Feature: gene Location: 2589022-2589729 bp Feature: domain Description: DUF4145 Location: 2589397-2589664 bp Feature: domain Description: DUF41 45 Location: 2589397-2589664 bp Feature: gene Location: 2957320-2958372 bp Feature: domain Description: PRK03598 Location: 2957329-2958184 bp Feature: domain Description: PRK03598 Location: 2957329-29581 84 bp Feature: gene Location: 2958369-2959646 bp Feature: domain Description: CcmA Location: 2958414-2959098 bp Feature: domain Description: CcmA Location: 295841 4-2959098 bp Feature: domain Description: CcmA Location: 2959215-2959302 bp Feature: domain Description: CcmA Location: 295921 5-2959302 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2959485-2959599 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2959485-2959599 bp Feature: gene Location: 2959937-2961517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960444-2961137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960444-2961 1 37 bp Feature: gene Location: 2962061-2962621 bp Feature: domain Description: COG4446 Location: 2962259-2962604 bp Feature: domain Description: COG4446 Location: 2962259-2962604 bp Feature: gene Location: 2962717-2963052 bp Feature: domain Description: DksA Location: 2962720-2963047 bp Feature: domain Description: DksA Location: 2962720-2963047 bp Feature: gene Location: 3099418-3102570 bp Feature: domain Description: COG0610 Location: 3099436-3102376 bp Feature: domain Description: COG061 0 Location: 3099436-31 02376 bp Feature: gene Location: 3102567-3103295 bp Feature: domain Description: DUF45 Location: 3102657-3103275 bp Feature: domain Description: DUF45 Location: 31 02657-31 03275 bp Feature: gene Location: 3103522-3104703 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 3103744-3104383 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 31 03744-31 04383 bp Feature: gene Location: 3104929-3105114 bp Feature: gene Location: 3105307-3105474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT protocat_pcaD (TIGR02427), DDE_Tnp_1 (pfam01609), RVT-GII, Tra8 (COG2826), INT_RitC_C_like (cd01182), GIIM (pfam08388), Tra5 (COG2801), DUF2384 (pfam09722), HicB (pfam05534), Zn_Tnp_IS91 (pfam14319)
Y2_Tnp (pfam04986), Phage_int_SAM_1 (pfam02899), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), DUF4145 (pfam13643), PRK03598 (putative efflux pump membrane fusion protein; Provisional), CcmA (COG4133), DDE_Tnp_IS66_C (pfam13817), COG4446 (Uncharacterized conserved protein, DUF1499 family ), DksA (COG1734)
COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-G2L