myRT

myRT report for GCA_004366535.1_ASM436653v1

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Seq: SORC01000002.1 (780401 bp)
Overview 1 RT 1: 222514-230229 bp 2 RT 2: 594163-597167 bp 3 RT 3: 705560-710779 bp 4 RT 4: 755187-759522 bp Neighborhood of RT #1 [222514, 230229] TesB RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 InsE RVT-GII INT_tnpB_C_Tn554 Neighborhood of RT #2 [594163, 597167] InsE RVT-GII GIIM Neighborhood of RT #3 [705560, 710779] FixJ RVT-GII nifA Neighborhood of RT #4 [755187, 759644] nodulat_NodC CE4_NodB RVT-GII RVT-GII GIIM HTH_21 CypX Feature: gene Location: 222514-223395 bp Feature: domain Description: TesB Location: 222535-223387 bp Feature: domain Description: TesB Location: 222535-223387 bp Feature: gene Location: 224023-224259 bp Feature: gene Location: 224313-225077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224319-224697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22431 9-224697 bp Feature: gene Location: 225168-226748 bp Feature: domain Description: LZ_Tnp_IS66 Location: 225309-225522 bp Feature: domain Description: LZ_Tnp_IS66 Location: 225309-225522 bp Feature: domain Description: zf-IS66 Location: 225546-225678 bp Feature: domain Description: zf-IS66 Location: 225546-225678 bp Feature: domain Description: DDE_Tnp_IS66 Location: 225726-226590 bp Feature: domain Description: DDE_Tnp_IS66 Location: 225726-226590 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 226611-226725 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22661 1 -226725 bp Feature: gene Location: 226779-227132 bp Feature: domain Description: TnpB_IS66 Location: 226806-227097 bp Feature: domain Description: TnpB_IS66 Location: 226806-227097 bp Feature: gene Location: 227108-227614 bp Feature: domain Description: InsE Location: 227183-227360 bp Feature: domain Description: InsE Location: 2271 83-227360 bp Feature: gene Location: 227623-227940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227626-227890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227626-227890 bp Feature: gene Location: 227972-229870 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 228746-229361 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 228746-229361 bp Feature: gene Location: 229867-230229 bp Feature: gene Location: 594163-594486 bp Feature: domain Description: InsE Location: 594175-594475 bp Feature: domain Description: InsE Location: 5941 75-594475 bp Feature: gene Location: 594591-594755 bp Feature: gene Location: 595090-596400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595381-596044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595381 -596044 bp Feature: domain Description: GIIM Note: maturase Location: 596113-596329 bp Feature: domain Description: GIIM Note: maturase Location: 5961 1 3-596329 bp Feature: gene Location: 596695-597003 bp Feature: gene Location: 597036-597167 bp Feature: gene Location: 705560-706207 bp Feature: domain Description: FixJ Location: 706016-706136 bp Feature: domain Description: FixJ Location: 70601 6-7061 36 bp Feature: gene Location: 706376-706657 bp Feature: gene Location: 706707-707204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706767-706893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706767-706893 bp Feature: gene Location: 707835-709670 bp Feature: domain Description: nifA Location: 707991-709668 bp Feature: domain Description: nifA Location: 707991 -709668 bp Feature: gene Location: 710555-710779 bp Feature: gene Location: 755187-756545 bp Feature: domain Description: nodulat_NodC Location: 755196-756372 bp Feature: domain Description: nodulat_NodC Location: 7551 96-756372 bp Feature: gene Location: 756542-757219 bp Feature: domain Description: CE4_NodB Location: 756605-757178 bp Feature: domain Description: CE4_NodB Location: 756605-7571 78 bp Feature: gene Location: 757831-758052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 757834-758050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 757834-758050 bp Feature: gene Location: 758065-758625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758068-758239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758068-758239 bp Feature: domain Description: GIIM Note: maturase Location: 758320-758551 bp Feature: domain Description: GIIM Note: maturase Location: 758320-758551 bp Feature: gene Location: 758776-759036 bp Feature: domain Description: HTH_21 Location: 758869-759034 bp Feature: domain Description: HTH_21 Location: 758869-759034 bp Feature: gene Location: 759063-759644 bp Feature: domain Description: CypX Location: 759129-759522 bp Feature: domain Description: CypX Location: 7591 29-759522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TesB (COG1946), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), InsE (COG2963), INT_tnpB_C_Tn554 (cd01187), GIIM (pfam08388)
FixJ (COG4566), nifA (TIGR01817), nodulat_NodC (TIGR04242), CE4_NodB (cd10943), HTH_21 (pfam13276), CypX (COG2124)

Seq: SORC01000001.1 (8360961 bp)
Overview 1 RT 1: 2400437-2406522 bp 2 RT 2: 3728704-3734018 bp 3 RT 3: 3785740-3793477 bp 4 RT 4: 4227635-4235075 bp 5 RT 5: 5171919-5179566 bp 6 RT 6: 5470101-5475950 bp 7 RT 7: 5767478-5772548 bp Neighborhood of RT #1 [2400437, 2406572] IS5 RVT-GII GIIM GGDEF Neighborhood of RT #2 [3728704, 3734020] Rve RVT-GII GIIM gram_neg_porins Neighborhood of RT #3 [3785740, 3793494] CheB-CheR_fusion MeTrc PAS SNARE_SEC20 sensory_box PAS BaeS PRK11107 RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Neighborhood of RT #4 [4227635, 4235161] SucC SucD CCL_ACL-C RVT-GII NHL PLN02586 Neighborhood of RT #5 [5171919, 5179727] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA Neighborhood of RT #6 [5470101, 5475950] Peptidase_M78 AbiJ_NTD3 RVT-Retrons Neighborhood of RT #7 [5767478, 5772562] DUF3375 RVT-Retrons GyrI-like 2A0305 Feature: gene Location: 2400437-2401390 bp Feature: domain Description: IS5 Location: 2400614-2401382 bp Feature: domain Description: IS5 Location: 2 400614-2 401382 bp Feature: gene Location: 2401868-2402239 bp Feature: gene Location: 2403160-2404443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2403409-2404072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 403409-2 404072 bp Feature: domain Description: GIIM Note: maturase Location: 2404141-2404357 bp Feature: domain Description: GIIM Note: maturase Location: 2 404141-2 404357 bp Feature: gene Location: 2404471-2404938 bp Feature: gene Location: 2405313-2406572 bp Feature: domain Description: GGDEF Location: 2406066-2406522 bp Feature: domain Description: GGDEF Location: 2 406066-2 40652 2 bp Feature: gene Location: 3728704-3729060 bp Feature: gene Location: 3729622-3729876 bp Feature: domain Description: Rve Location: 3729661-3729775 bp Feature: domain Description: Rve Location: 372 9661-372 9775 bp Feature: gene Location: 3730547-3732100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3730820-3731558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373082 0-3731558 bp Feature: domain Description: GIIM Note: maturase Location: 3731651-3731831 bp Feature: domain Description: GIIM Note: maturase Location: 3731651-3731831 bp Feature: gene Location: 3732467-3732607 bp Feature: gene Location: 3732878-3734020 bp Feature: domain Description: gram_neg_porins Location: 3732977-3734018 bp Feature: domain Description: gram_neg_porins Location: 3732 977-3734018 bp Feature: gene Location: 3785740-3785892 bp Feature: gene Location: 3786155-3790318 bp Feature: domain Description: CheB-CheR_fusion Location: 3786239-3786773 bp Feature: domain Description: CheB-CheR_fusion Location: 37862 39-3786773 bp Feature: domain Description: MeTrc Location: 3786875-3787652 bp Feature: domain Description: MeTrc Location: 3786875-3787652 bp Feature: domain Description: PAS Location: 3787814-3788081 bp Feature: domain Description: PAS Location: 3787814-3788081 bp Feature: domain Description: SNARE_SEC20 Location: 3788177-3788357 bp Feature: domain Description: SNARE_SEC2 0 Location: 3788177-3788357 bp Feature: domain Description: sensory_box Location: 3788540-3788762 bp Feature: domain Description: sensory_box Location: 3788540-3788762 bp Feature: domain Description: PAS Location: 3788819-3789083 bp Feature: domain Description: PAS Location: 3788819-3789083 bp Feature: domain Description: BaeS Location: 3789116-3789887 bp Feature: domain Description: BaeS Location: 3789116-3789887 bp Feature: domain Description: PRK11107 Location: 3789941-3790289 bp Feature: domain Description: PRK11107 Location: 3789941-37902 89 bp Feature: gene Location: 3790862-3792199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3791213-3791834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37912 13-3791834 bp Feature: domain Description: GIIM Note: maturase Location: 3791885-3792098 bp Feature: domain Description: GIIM Note: maturase Location: 3791885-3792 098 bp Feature: gene Location: 3792769-3792900 bp Feature: domain Description: Phage_int_SAM_4 Location: 3792802-3792898 bp Feature: domain Description: Phage_int_SAM_4 Location: 3792 802 -3792 898 bp Feature: gene Location: 3793021-3793494 bp Feature: domain Description: INT_IntI_C Location: 3793081-3793477 bp Feature: domain Description: INT_IntI_C Location: 3793081-3793477 bp Feature: gene Location: 4227635-4228933 bp Feature: domain Description: SucC Location: 4227668-4228763 bp Feature: domain Description: SucC Location: 42 2 7668-42 2 8763 bp Feature: gene Location: 4228926-4231643 bp Feature: domain Description: SucD Location: 4229013-4229811 bp Feature: domain Description: SucD Location: 42 2 9013-42 2 9811 bp Feature: domain Description: CCL_ACL-C Location: 4230816-4231632 bp Feature: domain Description: CCL_ACL-C Location: 42 30816-42 31632 bp Feature: gene Location: 4231735-4232343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4231984-4232227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 31984-42 32 2 2 7 bp Feature: gene Location: 4233385-4234512 bp Feature: domain Description: NHL Location: 4233481-4234153 bp Feature: domain Description: NHL Location: 42 33481-42 34153 bp Feature: gene Location: 4234691-4235161 bp Feature: domain Description: PLN02586 Location: 4234874-4235075 bp Feature: domain Description: PLN02 586 Location: 42 34874-42 35075 bp Feature: gene Location: 5171919-5173160 bp Feature: domain Description: argJ Location: 5171961-5173158 bp Feature: domain Description: argJ Location: 5171961-5173158 bp Feature: gene Location: 5173310-5176120 bp Feature: domain Description: PRK12904 Location: 5173322-5176112 bp Feature: domain Description: PRK12 904 Location: 517332 2 -5176112 bp Feature: gene Location: 5176323-5177924 bp Feature: domain Description: RVT_N Location: 5176326-5176524 bp Feature: domain Description: RVT_N Location: 517632 6-517652 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5176569-5177217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5176569-51772 17 bp Feature: domain Description: GIIM Note: maturase Location: 5177271-5177502 bp Feature: domain Description: GIIM Note: maturase Location: 51772 71-5177502 bp Feature: domain Description: HNHc Note: nucleases Location: 5177718-5177886 bp Feature: domain Description: HNHc Note: nucleases Location: 5177718-5177886 bp Feature: gene Location: 5179069-5179266 bp Feature: gene Location: 5179173-5179727 bp Feature: domain Description: DciA Location: 5179311-5179566 bp Feature: domain Description: DciA Location: 5179311-5179566 bp Feature: gene Location: 5470101-5470325 bp Feature: domain Description: Peptidase_M78 Location: 5470146-5470293 bp Feature: domain Description: Peptidase_M78 Location: 5470146-54702 93 bp Feature: gene Location: 5470443-5471888 bp Feature: domain Description: AbiJ_NTD3 Location: 5470752-5471250 bp Feature: domain Description: AbiJ_NTD3 Location: 5470752 -54712 50 bp Feature: gene Location: 5472294-5474045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5472429-5473071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5472 42 9-5473071 bp Feature: gene Location: 5473545-5473832 bp Feature: gene Location: 5474673-5475950 bp Feature: gene Location: 5767478-5767687 bp Feature: gene Location: 5767714-5768085 bp Feature: domain Description: DUF3375 Location: 5767747-5768077 bp Feature: domain Description: DUF3375 Location: 5767747-5768077 bp Feature: gene Location: 5768332-5769711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5768797-5769436 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5768797-5769436 bp Feature: gene Location: 5770370-5770852 bp Feature: domain Description: GyrI-like Location: 5770385-5770847 bp Feature: domain Description: GyrI-like Location: 5770385-5770847 bp Feature: gene Location: 5771105-5772562 bp Feature: domain Description: 2A0305 Location: 5771204-5772548 bp Feature: domain Description: 2 A0305 Location: 57712 04-5772 548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), GGDEF (TIGR00254), Rve (COG3316), gram_neg_porins (cd00342), CheB-CheR_fusion (cd16434), MeTrc (smart00138), PAS (smart00091), SNARE_SEC20 (cd15865)
sensory_box (TIGR00229), BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), SucC (COG0045), SucD (COG0074), CCL_ACL-C (cd06100), NHL (pfam01436), PLN02586 (probable cinnamyl alcohol dehydrogenase)
argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), HNHc (smart00507), DciA, Peptidase_M78 (pfam06114), AbiJ_NTD3 (pfam18860), RVT-Retrons, DUF3375 (pfam11855), GyrI-like (pfam06445)
2A0305 (TIGR00908)