myRT

myRT report for GCA_004366615.1_ASM436661v1

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Seq: SOSF01000001.1 (5534253 bp)
Overview 1 RT 1: 464981-471686 bp 2 RT 2: 536979-542245 bp 3 RT 3: 867894-870716 bp 4 RT 4: 1732290-1736759 bp 5 RT 5: 1778039-1782471 bp 6 RT 6: 2670917-2675354 bp 7 RT 7: 4820773-4823871 bp 8 RT 8: 5263260-5269497 bp Neighborhood of RT #1 [464981, 471730] DDE_Tnp_IS240 Glyco_transf_90 RVT-GII Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Neighborhood of RT #2 [536979, 542259] trehalose_OtsA RVT-GII RVT-GII GIIM TcpQ Neighborhood of RT #3 [867894, 870716] RVT-GII envZ Neighborhood of RT #4 [1732290, 1737316] Rve COG3547 COG3547 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #5 [1778039, 1782497] DDE_Tnp_IS240 Rve RVT-GII GIIM HTH_23 HTH_23 DDE_3 Rve Neighborhood of RT #6 [2670917, 2675374] DltE AcrR RVT-GII HigB Neighborhood of RT #7 [4820773, 4823906] RVT_N RVT-GII GIIM Rve Histone_HNS Neighborhood of RT #8 [5263260, 5269646] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66 Feature: gene Location: 464981-465319 bp Feature: domain Description: DDE_Tnp_IS240 Location: 464993-465248 bp Feature: domain Description: DDE_Tnp_IS240 Location: 464993-465248 bp Feature: gene Location: 465946-466875 bp Feature: domain Description: Glyco_transf_90 Location: 466363-466819 bp Feature: domain Description: Glyco_transf_90 Location: 466363-46681 9 bp Feature: gene Location: 467622-468905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467850-468537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467850-468537 bp Feature: gene Location: 469018-470373 bp Feature: domain Description: Tnp_DNA_bind Location: 469024-469150 bp Feature: domain Description: Tnp_DNA_bind Location: 469024-4691 50 bp Feature: domain Description: DDE_Tnp_1 Location: 469777-470080 bp Feature: domain Description: DDE_Tnp_1 Location: 469777-470080 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 470083-470365 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 470083-470365 bp Feature: gene Location: 470498-471730 bp Feature: domain Description: Tnp_DNA_bind Location: 470573-470744 bp Feature: domain Description: Tnp_DNA_bind Location: 470573-470744 bp Feature: domain Description: DDE_Tnp_1 Location: 471452-471587 bp Feature: domain Description: DDE_Tnp_1 Location: 471 452-471 587 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 471593-471686 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 471 593-471 686 bp Feature: gene Location: 536979-537896 bp Feature: gene Location: 538524-538751 bp Feature: domain Description: trehalose_OtsA Location: 538527-538746 bp Feature: domain Description: trehalose_OtsA Location: 538527-538746 bp Feature: gene Location: 538979-539269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538994-539231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538994-539231 bp Feature: gene Location: 539304-539711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539343-539454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539343-539454 bp Feature: domain Description: GIIM Note: maturase Location: 539529-539706 bp Feature: domain Description: GIIM Note: maturase Location: 539529-539706 bp Feature: gene Location: 539926-540090 bp Feature: gene Location: 541291-542259 bp Feature: domain Description: TcpQ Location: 542011-542245 bp Feature: domain Description: TcpQ Location: 54201 1 -542245 bp Feature: gene Location: 867894-868166 bp Feature: gene Location: 868165-868299 bp Feature: gene Location: 868846-869073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868864-869017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868864-86901 7 bp Feature: gene Location: 869207-870553 bp Feature: domain Description: envZ Location: 869600-870536 bp Feature: domain Description: envZ Location: 869600-870536 bp Feature: gene Location: 870534-870716 bp Feature: gene Location: 1732290-1732763 bp Feature: domain Description: Rve Location: 1732317-1732734 bp Feature: domain Description: Rve Location: 1 73231 7-1 732734 bp Feature: gene Location: 1732836-1734182 bp Feature: domain Description: COG3547 Location: 1732890-1733289 bp Feature: domain Description: COG3547 Location: 1 732890-1 733289 bp Feature: domain Description: COG3547 Location: 1733604-1734024 bp Feature: domain Description: COG3547 Location: 1 733604-1 734024 bp Feature: gene Location: 1734481-1735239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1734484-1734733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 734484-1 734733 bp Feature: domain Description: GIIM Note: maturase Location: 1734784-1735018 bp Feature: domain Description: GIIM Note: maturase Location: 1 734784-1 73501 8 bp Feature: gene Location: 1735410-1735595 bp Feature: gene Location: 1735592-1737316 bp Feature: domain Description: Resolvase Location: 1735613-1736051 bp Feature: domain Description: Resolvase Location: 1 73561 3-1 736051 bp Feature: domain Description: Recombinase Location: 1736147-1736510 bp Feature: domain Description: Recombinase Location: 1 7361 47-1 73651 0 bp Feature: domain Description: Zn_ribbon_recom Location: 1736555-1736759 bp Feature: domain Description: Zn_ribbon_recom Location: 1 736555-1 736759 bp Feature: gene Location: 1778039-1778395 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1778042-1778315 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1 778042-1 77831 5 bp Feature: gene Location: 1778843-1779322 bp Feature: domain Description: Rve Location: 1778897-1779287 bp Feature: domain Description: Rve Location: 1 778897-1 779287 bp Feature: gene Location: 1779333-1780367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1779348-1779984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 779348-1 779984 bp Feature: domain Description: GIIM Note: maturase Location: 1780065-1780284 bp Feature: domain Description: GIIM Note: maturase Location: 1 780065-1 780284 bp Feature: gene Location: 1780393-1781451 bp Feature: domain Description: HTH_23 Location: 1780477-1780609 bp Feature: domain Description: HTH_23 Location: 1 780477-1 780609 bp Feature: domain Description: HTH_23 Location: 1780717-1780774 bp Feature: domain Description: HTH_23 Location: 1 78071 7-1 780774 bp Feature: domain Description: DDE_3 Location: 1780900-1781335 bp Feature: domain Description: DDE_3 Location: 1 780900-1 781 335 bp Feature: gene Location: 1782177-1782497 bp Feature: domain Description: Rve Location: 1782219-1782471 bp Feature: domain Description: Rve Location: 1 78221 9-1 782471 bp Feature: gene Location: 2670917-2671744 bp Feature: domain Description: DltE Location: 2670950-2671706 bp Feature: domain Description: DltE Location: 2670950-2671 706 bp Feature: gene Location: 2671977-2672540 bp Feature: domain Description: AcrR Location: 2671995-2672469 bp Feature: domain Description: AcrR Location: 2671 995-2672469 bp Feature: gene Location: 2672993-2673985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672999-2673629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672999-2673629 bp Feature: gene Location: 2674159-2674431 bp Feature: gene Location: 2675057-2675374 bp Feature: domain Description: HigB Location: 2675069-2675354 bp Feature: domain Description: HigB Location: 2675069-2675354 bp Feature: gene Location: 4820773-4821003 bp Feature: gene Location: 4821272-4821520 bp Feature: gene Location: 4821536-4823041 bp Feature: domain Description: RVT_N Location: 4821605-4821848 bp Feature: domain Description: RVT_N Location: 4821 605-4821 848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821893-4822535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821 893-4822535 bp Feature: domain Description: GIIM Note: maturase Location: 4822586-4822820 bp Feature: domain Description: GIIM Note: maturase Location: 4822586-4822820 bp Feature: gene Location: 4823118-4823462 bp Feature: domain Description: Rve Location: 4823127-4823433 bp Feature: domain Description: Rve Location: 48231 27-4823433 bp Feature: gene Location: 4823613-4823906 bp Feature: domain Description: Histone_HNS Location: 4823631-4823871 bp Feature: domain Description: Histone_HNS Location: 4823631 -4823871 bp Feature: gene Location: 5263260-5263529 bp Feature: gene Location: 5263964-5265586 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5264447-5264717 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5264447-526471 7 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5265059-5265437 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5265059-5265437 bp Feature: gene Location: 5266404-5267687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5266632-5267319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5266632-526731 9 bp Feature: gene Location: 5267835-5268014 bp Feature: gene Location: 5268027-5269646 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5268510-5268894 bp Feature: domain Description: DDE_Tnp_IS66 Location: 526851 0-5268894 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5269116-5269497 bp Feature: domain Description: DDE_Tnp_IS66 Location: 52691 1 6-5269497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), Glyco_transf_90 (pfam05686), RVT-GII, Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), trehalose_OtsA (TIGR02400), GIIM (pfam08388), TcpQ (pfam10671), envZ (PRK09467)
Rve (COG3316), COG3547 (Transposase ), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_23 (pfam13384), DDE_3 (pfam13358), DltE (COG3967), AcrR (COG1309), HigB (COG4680)
RVT_N (pfam13655), Histone_HNS (pfam00816), DDE_Tnp_IS66 (pfam03050)

Seq: SOSF01000002.1 (5183552 bp)
Overview 1 RT 1: 816784-820900 bp 2 RT 2: 2319540-2326124 bp 3 RT 3: 2375644-2382042 bp 4 RT 4: 2776279-2781049 bp 5 RT 5: 2789685-2795463 bp 6 RT 6: 2856486-2860574 bp 7 RT 7: 2923008-2929254 bp 8 RT 8: 3083294-3088317 bp Neighborhood of RT #1 [816784, 820905] PRK10188 Arm-DNA-bind_3 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #2 [2319540, 2326124] Rve RVT_N RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 COG3547 Neighborhood of RT #3 [2375644, 2382065] RVT_N RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII COG3547 COG3547 Rve Neighborhood of RT #4 [2776279, 2781972] PHA02517 InsE RVT-GII Recombinase Zn_ribbon_recom HTH_17 PinE Zn_ribbon_recom Neighborhood of RT #5 [2789685, 2795463] DUF5372 RVT-GII GIIM Rve COG3547 COG3547 RVT-GII GIIM RVT_N RVT-GII Neighborhood of RT #6 [2856486, 2860600] RVT_N RVT-GII RVT-GII GIIM COG3547 COG3547 Rve Neighborhood of RT #7 [2923008, 2929254] Rve COG3547 COG3547 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom RVT_N RVT-GII Neighborhood of RT #8 [3083294, 3088331] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII HpaI Feature: gene Location: 816784-817497 bp Feature: domain Description: PRK10188 Location: 816793-817489 bp Feature: domain Description: PRK10188 Location: 816793-817489 bp Feature: gene Location: 817800-818273 bp Feature: domain Description: Arm-DNA-bind_3 Location: 817809-818067 bp Feature: domain Description: Arm-DNA-bind_3 Location: 817809-818067 bp Feature: gene Location: 818908-819834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819112-819415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819112 -819415 bp Feature: domain Description: GIIM Note: maturase Location: 819466-819676 bp Feature: domain Description: GIIM Note: maturase Location: 819466-819676 bp Feature: gene Location: 819767-820018 bp Feature: domain Description: InsE Location: 819776-820007 bp Feature: domain Description: InsE Location: 819776-82 0007 bp Feature: gene Location: 820015-820905 bp Feature: domain Description: PHA02517 Location: 820081-820900 bp Feature: domain Description: PHA02 517 Location: 82 0081-82 0900 bp Feature: gene Location: 2319540-2319902 bp Feature: domain Description: Rve Location: 2319606-2319789 bp Feature: domain Description: Rve Location: 2 319606-2 319789 bp Feature: gene Location: 2320171-2320353 bp Feature: gene Location: 2320436-2321182 bp Feature: domain Description: RVT_N Location: 2320505-2320748 bp Feature: domain Description: RVT_N Location: 2 32 0505-2 32 0748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2320793-2321171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 0793-2 32 1171 bp Feature: gene Location: 2321313-2321498 bp Feature: gene Location: 2321495-2323219 bp Feature: domain Description: Resolvase Location: 2321516-2321954 bp Feature: domain Description: Resolvase Location: 2 32 1516-2 32 1954 bp Feature: domain Description: Recombinase Location: 2322050-2322413 bp Feature: domain Description: Recombinase Location: 2 32 2 050-2 32 2 413 bp Feature: domain Description: Zn_ribbon_recom Location: 2322458-2322662 bp Feature: domain Description: Zn_ribbon_recom Location: 2 32 2 458-2 32 2 662 bp Feature: gene Location: 2323200-2323958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323203-2323452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 32 03-2 32 3452 bp Feature: domain Description: GIIM Note: maturase Location: 2323503-2323737 bp Feature: domain Description: GIIM Note: maturase Location: 2 32 3503-2 32 3737 bp Feature: gene Location: 2324257-2325603 bp Feature: domain Description: COG3547 Location: 2324311-2324710 bp Feature: domain Description: COG3547 Location: 2 32 4311-2 32 4710 bp Feature: domain Description: COG3547 Location: 2325028-2325445 bp Feature: domain Description: COG3547 Location: 2 32 502 8-2 32 5445 bp Feature: gene Location: 2325828-2326124 bp Feature: gene Location: 2375644-2375811 bp Feature: gene Location: 2376182-2376364 bp Feature: gene Location: 2376447-2377193 bp Feature: domain Description: RVT_N Location: 2376516-2376759 bp Feature: domain Description: RVT_N Location: 2 376516-2 376759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2376804-2377182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 376804-2 377182 bp Feature: gene Location: 2377324-2377509 bp Feature: gene Location: 2377506-2379230 bp Feature: domain Description: Resolvase Location: 2377527-2377965 bp Feature: domain Description: Resolvase Location: 2 37752 7-2 377965 bp Feature: domain Description: Recombinase Location: 2378061-2378424 bp Feature: domain Description: Recombinase Location: 2 378061-2 37842 4 bp Feature: domain Description: Zn_ribbon_recom Location: 2378469-2378673 bp Feature: domain Description: Zn_ribbon_recom Location: 2 378469-2 378673 bp Feature: gene Location: 2379211-2379798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2379214-2379463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3792 14-2 379463 bp Feature: gene Location: 2380269-2381615 bp Feature: domain Description: COG3547 Location: 2380323-2380722 bp Feature: domain Description: COG3547 Location: 2 38032 3-2 38072 2 bp Feature: domain Description: COG3547 Location: 2381040-2381457 bp Feature: domain Description: COG3547 Location: 2 381040-2 381457 bp Feature: gene Location: 2381688-2382065 bp Feature: domain Description: Rve Location: 2381757-2382042 bp Feature: domain Description: Rve Location: 2 381757-2 382 042 bp Feature: gene Location: 2776279-2777169 bp Feature: domain Description: PHA02517 Location: 2776345-2777164 bp Feature: domain Description: PHA02 517 Location: 2 776345-2 777164 bp Feature: gene Location: 2777166-2777417 bp Feature: domain Description: InsE Location: 2777175-2777406 bp Feature: domain Description: InsE Location: 2 777175-2 777406 bp Feature: gene Location: 2777858-2778115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778062-2778107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 778062 -2 778107 bp Feature: gene Location: 2778124-2779776 bp Feature: domain Description: Recombinase Location: 2778283-2778643 bp Feature: domain Description: Recombinase Location: 2 7782 83-2 778643 bp Feature: domain Description: Zn_ribbon_recom Location: 2778700-2778877 bp Feature: domain Description: Zn_ribbon_recom Location: 2 778700-2 778877 bp Feature: domain Description: HTH_17 Location: 2779573-2779666 bp Feature: domain Description: HTH_17 Location: 2 779573-2 779666 bp Feature: gene Location: 2779849-2781972 bp Feature: domain Description: PinE Location: 2779969-2780599 bp Feature: domain Description: PinE Location: 2 779969-2 780599 bp Feature: domain Description: Zn_ribbon_recom Location: 2780893-2781049 bp Feature: domain Description: Zn_ribbon_recom Location: 2 780893-2 781049 bp Feature: gene Location: 2789685-2790017 bp Feature: gene Location: 2790070-2790357 bp Feature: domain Description: DUF5372 Location: 2790088-2790319 bp Feature: domain Description: DUF5372 Location: 2 790088-2 790319 bp Feature: gene Location: 2790402-2791400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2790408-2791014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 790408-2 791014 bp Feature: domain Description: GIIM Note: maturase Location: 2791095-2791317 bp Feature: domain Description: GIIM Note: maturase Location: 2 791095-2 791317 bp Feature: gene Location: 2791509-2791706 bp Feature: domain Description: Rve Location: 2791512-2791677 bp Feature: domain Description: Rve Location: 2 791512 -2 791677 bp Feature: gene Location: 2791779-2793125 bp Feature: domain Description: COG3547 Location: 2791833-2792232 bp Feature: domain Description: COG3547 Location: 2 791833-2 792 2 32 bp Feature: domain Description: COG3547 Location: 2792550-2792967 bp Feature: domain Description: COG3547 Location: 2 792 550-2 792 967 bp Feature: gene Location: 2793424-2794182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793427-2793676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 79342 7-2 793676 bp Feature: domain Description: GIIM Note: maturase Location: 2793727-2793961 bp Feature: domain Description: GIIM Note: maturase Location: 2 79372 7-2 793961 bp Feature: gene Location: 2794163-2794930 bp Feature: domain Description: RVT_N Location: 2794232-2794475 bp Feature: domain Description: RVT_N Location: 2 7942 32 -2 794475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794520-2794886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 79452 0-2 794886 bp Feature: gene Location: 2794946-2795218 bp Feature: gene Location: 2795266-2795463 bp Feature: gene Location: 2856486-2856620 bp Feature: gene Location: 2856939-2857187 bp Feature: gene Location: 2857203-2857970 bp Feature: domain Description: RVT_N Location: 2857272-2857515 bp Feature: domain Description: RVT_N Location: 2 8572 72 -2 857515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857560-2857926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 857560-2 85792 6 bp Feature: gene Location: 2857951-2858709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857954-2858203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 857954-2 8582 03 bp Feature: domain Description: GIIM Note: maturase Location: 2858254-2858488 bp Feature: domain Description: GIIM Note: maturase Location: 2 8582 54-2 858488 bp Feature: gene Location: 2859008-2860354 bp Feature: domain Description: COG3547 Location: 2859062-2859461 bp Feature: domain Description: COG3547 Location: 2 859062 -2 859461 bp Feature: domain Description: COG3547 Location: 2859779-2860196 bp Feature: domain Description: COG3547 Location: 2 859779-2 860196 bp Feature: gene Location: 2860427-2860600 bp Feature: domain Description: Rve Location: 2860442-2860574 bp Feature: domain Description: Rve Location: 2 860442 -2 860574 bp Feature: gene Location: 2923008-2923481 bp Feature: domain Description: Rve Location: 2923035-2923455 bp Feature: domain Description: Rve Location: 2 92 3035-2 92 3455 bp Feature: gene Location: 2923554-2924900 bp Feature: domain Description: COG3547 Location: 2923608-2924007 bp Feature: domain Description: COG3547 Location: 2 92 3608-2 92 4007 bp Feature: domain Description: COG3547 Location: 2924325-2924742 bp Feature: domain Description: COG3547 Location: 2 92 432 5-2 92 4742 bp Feature: gene Location: 2925199-2925957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925202-2925451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 52 02 -2 92 5451 bp Feature: domain Description: GIIM Note: maturase Location: 2925502-2925736 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 5502 -2 92 5736 bp Feature: gene Location: 2925938-2927662 bp Feature: domain Description: Resolvase Location: 2925959-2926397 bp Feature: domain Description: Resolvase Location: 2 92 5959-2 92 6397 bp Feature: domain Description: Recombinase Location: 2926493-2926856 bp Feature: domain Description: Recombinase Location: 2 92 6493-2 92 6856 bp Feature: domain Description: Zn_ribbon_recom Location: 2926901-2927105 bp Feature: domain Description: Zn_ribbon_recom Location: 2 92 6901-2 92 7105 bp Feature: gene Location: 2927659-2927844 bp Feature: gene Location: 2927975-2928721 bp Feature: domain Description: RVT_N Location: 2928044-2928287 bp Feature: domain Description: RVT_N Location: 2 92 8044-2 92 82 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2928332-2928710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 8332 -2 92 8710 bp Feature: gene Location: 2928737-2929009 bp Feature: gene Location: 2929057-2929254 bp Feature: gene Location: 3083294-3084913 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3083777-3084161 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3083777-3084161 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3084383-3084764 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3084383-3084764 bp Feature: gene Location: 3084926-3085105 bp Feature: gene Location: 3085253-3086578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3085523-3086210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308552 3-30862 10 bp Feature: gene Location: 3087090-3087416 bp Feature: gene Location: 3087543-3088331 bp Feature: domain Description: HpaI Location: 3087576-3088317 bp Feature: domain Description: HpaI Location: 3087576-3088317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10188 (transcriptional regulator SdiA), Arm-DNA-bind_3 (pfam13356), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Rve (COG3316), RVT_N (pfam13655), Resolvase (smart00857), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), COG3547 (Transposase ), HTH_17 (pfam12728), PinE (COG1961), DUF5372 (pfam17342), DDE_Tnp_IS66 (pfam03050), HpaI (TIGR02311)

Seq: SOSF01000003.1 (367359 bp)
Overview 1 RT 1: 46523-50060 bp Neighborhood of RT #1 [46523, 50062] HTH_1 PBP2_OccR GIIM RVT-GII Arabinose_bd AraC Feature: gene Location: 46523-47500 bp Feature: domain Description: HTH_1 Location: 46532-46706 bp Feature: domain Description: HTH_1 Location: 4653 2-46706 bp Feature: domain Description: PBP2_OccR Location: 46799-47387 bp Feature: domain Description: PBP2_OccR Location: 46799-473 87 bp Feature: gene Location: 47974-48231 bp Feature: domain Description: GIIM Note: maturase Location: 47980-48145 bp Feature: domain Description: GIIM Note: maturase Location: 47980-48145 bp Feature: gene Location: 48247-48498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48277-48391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48277-483 91 bp Feature: gene Location: 48634-48807 bp Feature: gene Location: 49052-50062 bp Feature: domain Description: Arabinose_bd Location: 49136-49685 bp Feature: domain Description: Arabinose_bd Location: 4913 6-49685 bp Feature: domain Description: AraC Location: 49769-50060 bp Feature: domain Description: AraC Location: 49769-50060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_OccR (cd08457), GIIM (pfam08388), RVT-GII, Arabinose_bd (pfam12625), AraC (COG2207)