myRT

myRT report for GCA_004369205.1_ASM436920v1

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Seq: QFGA01000003.1 (569705 bp)
Overview 1 RT 1: 232869-238681 bp Neighborhood of RT #1 [232869, 238681] FN3 FN3 RVT-GII GIIM Feature: gene Location: 232869-235355 bp Feature: domain Description: FN3 Location: 233490-233730 bp Feature: domain Description: FN3 Location: 233490-233730 bp Feature: domain Description: FN3 Location: 233793-234141 bp Feature: domain Description: FN3 Location: 233793-2341 41 bp Feature: gene Location: 235762-235908 bp Feature: gene Location: 236145-237419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236361-236982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236361 -236982 bp Feature: domain Description: GIIM Note: maturase Location: 237024-237258 bp Feature: domain Description: GIIM Note: maturase Location: 237024-237258 bp Feature: gene Location: 237532-237666 bp Feature: gene Location: 237908-238681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), RVT-GII, GIIM (pfam08388)

Seq: QFGA01000001.1 (2352337 bp)
Overview 1 RT 1: 525893-531649 bp 2 RT 2: 1559503-1565180 bp Neighborhood of RT #1 [525893, 531654] CuRO_1_BOD_CotA_like CuRO_2_CotA_like CuRO_3_BOD SufI FN3 FN3 FN3 RVT-GII DUF1540 PAS GGDEF Neighborhood of RT #2 [1559503, 1565188] AcnX_swivel ER_like_FMN Lpd FadH2 RVT-GII GIIM PRK13357 InsE Feature: gene Location: 525893-529567 bp Feature: domain Description: CuRO_1_BOD_CotA_like Location: 526112-526757 bp Feature: domain Description: CuRO_1_BOD_CotA_like Location: 52 6112 -52 6757 bp Feature: domain Description: CuRO_2_CotA_like Location: 526838-527762 bp Feature: domain Description: CuRO_2 _CotA_like Location: 52 6838-52 7762 bp Feature: domain Description: CuRO_3_BOD Location: 528221-528404 bp Feature: domain Description: CuRO_3_BOD Location: 52 82 2 1-52 8404 bp Feature: domain Description: SufI Location: 528575-528641 bp Feature: domain Description: SufI Location: 52 8575-52 8641 bp Feature: domain Description: FN3 Location: 528659-528908 bp Feature: domain Description: FN3 Location: 52 8659-52 8908 bp Feature: domain Description: FN3 Location: 528989-529250 bp Feature: domain Description: FN3 Location: 52 8989-52 92 50 bp Feature: domain Description: FN3 Location: 529274-529538 bp Feature: domain Description: FN3 Location: 52 92 74-52 9538 bp Feature: gene Location: 529605-529769 bp Feature: gene Location: 529824-530321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529908-530106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 9908-530106 bp Feature: gene Location: 530521-530679 bp Feature: domain Description: DUF1540 Location: 530536-530662 bp Feature: domain Description: DUF1540 Location: 530536-530662 bp Feature: gene Location: 530773-531654 bp Feature: domain Description: PAS Location: 530827-531202 bp Feature: domain Description: PAS Location: 53082 7-5312 02 bp Feature: domain Description: GGDEF Location: 531220-531649 bp Feature: domain Description: GGDEF Location: 5312 2 0-531649 bp Feature: gene Location: 1559503-1559946 bp Feature: domain Description: AcnX_swivel Location: 1559536-1559848 bp Feature: domain Description: AcnX_swivel Location: 1559536-1559848 bp Feature: gene Location: 1559969-1561954 bp Feature: domain Description: ER_like_FMN Location: 1559993-1561121 bp Feature: domain Description: ER_like_FMN Location: 1559993-156112 1 bp Feature: domain Description: Lpd Location: 1561157-1561280 bp Feature: domain Description: Lpd Location: 1561157-15612 80 bp Feature: domain Description: FadH2 Location: 1561418-1561829 bp Feature: domain Description: FadH2 Location: 1561418-156182 9 bp Feature: gene Location: 1562759-1564057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563014-1563704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563014-1563704 bp Feature: domain Description: GIIM Note: maturase Location: 1563764-1563974 bp Feature: domain Description: GIIM Note: maturase Location: 1563764-1563974 bp Feature: gene Location: 1564532-1564747 bp Feature: domain Description: PRK13357 Location: 1564547-1564739 bp Feature: domain Description: PRK13357 Location: 1564547-1564739 bp Feature: gene Location: 1564868-1565188 bp Feature: domain Description: InsE Location: 1564907-1565180 bp Feature: domain Description: InsE Location: 1564907-1565180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CuRO_1_BOD_CotA_like (cd13844), CuRO_2_CotA_like (cd13868), CuRO_3_BOD (cd13889), SufI (COG2132), FN3 (smart00060), RVT-GII, DUF1540 (pfam07561), PAS (smart00091), GGDEF (TIGR00254), AcnX_swivel (cd01356)
ER_like_FMN (cd02931), Lpd (COG1249), FadH2 (COG0446), GIIM (pfam08388), PRK13357 (branched-chain amino acid aminotransferase; Provisional), InsE (COG2963)

Seq: QFGA01000002.1 (1112884 bp)
Overview 1 RT 1: 786238-791632 bp 2 RT 2: 825555-829579 bp Neighborhood of RT #1 [786238, 791646] MrcB CBM_25 RVT-GII GIIM QdoI Neighborhood of RT #2 [825555, 829626] HTH_32 rve Mu-transpos_C RVT-GII HTH_Tnp_1 PHA02517 Feature: gene Location: 786238-788520 bp Feature: domain Description: MrcB Location: 786256-788503 bp Feature: domain Description: MrcB Location: 786256-788503 bp Feature: gene Location: 788767-789078 bp Feature: domain Description: CBM_25 Location: 788839-789076 bp Feature: domain Description: CBM_25 Location: 78883 9-789076 bp Feature: gene Location: 789180-790448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789393-790014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7893 93 -790014 bp Feature: domain Description: GIIM Note: maturase Location: 790056-790287 bp Feature: domain Description: GIIM Note: maturase Location: 790056-790287 bp Feature: gene Location: 790467-791123 bp Feature: gene Location: 791299-791646 bp Feature: domain Description: QdoI Location: 791362-791632 bp Feature: domain Description: QdoI Location: 7913 62-79163 2 bp Feature: gene Location: 825555-826973 bp Feature: domain Description: HTH_32 Location: 825846-826077 bp Feature: domain Description: HTH_3 2 Location: 825846-826077 bp Feature: domain Description: rve Location: 826152-826500 bp Feature: domain Description: rve Location: 826152-826500 bp Feature: domain Description: Mu-transpos_C Location: 826683-826851 bp Feature: domain Description: Mu-transpos_C Location: 826683 -826851 bp Feature: gene Location: 826989-827531 bp Feature: gene Location: 827565-828215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827568-828126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827568-828126 bp Feature: gene Location: 828368-828694 bp Feature: domain Description: HTH_Tnp_1 Location: 828374-828620 bp Feature: domain Description: HTH_Tnp_1 Location: 8283 74-828620 bp Feature: gene Location: 828736-829626 bp Feature: domain Description: PHA02517 Location: 828877-829579 bp Feature: domain Description: PHA02517 Location: 828877-829579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), CBM_25 (smart01066), RVT-GII, GIIM (pfam08388), QdoI (COG1917), HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QFGA01000004.1 (346091 bp)
Overview 1 RT 1: 120234-126267 bp 2 RT 2: 140466-144540 bp Neighborhood of RT #1 [120234, 126267] Cu_amine_oxidN1 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [140466, 144540] rve Mu-transpos_C ExeA RVT-GII RVT-GII Feature: gene Location: 120234-122543 bp Feature: domain Description: Cu_amine_oxidN1 Location: 122163-122295 bp Feature: domain Description: Cu_amine_oxidN1 Location: 122163-122295 bp Feature: gene Location: 122566-122748 bp Feature: gene Location: 123002-124318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123356-123974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123356-123974 bp Feature: domain Description: GIIM Note: maturase Location: 124025-124247 bp Feature: domain Description: GIIM Note: maturase Location: 124 025-124 24 7 bp Feature: gene Location: 124976-125677 bp Feature: domain Description: PHA02517 Location: 125033-125672 bp Feature: domain Description: PHA02517 Location: 125033-125672 bp Feature: gene Location: 125716-126267 bp Feature: gene Location: 140466-141440 bp Feature: domain Description: rve Location: 140661-140967 bp Feature: domain Description: rve Location: 14 0661-14 0967 bp Feature: domain Description: Mu-transpos_C Location: 141150-141318 bp Feature: domain Description: Mu-transpos_C Location: 14 1150-14 1318 bp Feature: gene Location: 141437-142240 bp Feature: domain Description: ExeA Location: 141452-142214 bp Feature: domain Description: ExeA Location: 14 14 52-14 2214 bp Feature: gene Location: 142398-143288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142404-142887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 24 04 -14 2887 bp Feature: gene Location: 143289-143822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143619-143811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 3619-14 3811 bp Feature: gene Location: 143916-144266 bp Feature: gene Location: 144388-144540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cu_amine_oxidN1 (pfam07833), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), rve (pfam00665), Mu-transpos_C (pfam09299), ExeA (COG3267)