myRT

myRT report for GCA_004370215.1_ASM437021v1

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Seq: RWLV01000002.1 (495682 bp)
Overview 1 RT 1: 3-6916 bp Neighborhood of RT #1 [3, 7203] Tra5 RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 3-578 bp Feature: domain Description: Tra5 Location: 39-519 bp Feature: domain Description: Tra5 Location: 39-51 9 bp Feature: gene Location: 672-3152 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 675-1104 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 675-1 1 04 bp Feature: domain Description: nitrilase Location: 2466-3048 bp Feature: domain Description: nitrilase Location: 2466-3048 bp Feature: gene Location: 3522-4187 bp Feature: domain Description: COG4127 Location: 3525-4176 bp Feature: domain Description: COG41 27 Location: 3525-41 76 bp Feature: gene Location: 5452-7203 bp Feature: domain Description: restrict_AAA_1 Location: 5455-6202 bp Feature: domain Description: restrict_AAA_1 Location: 5455-6202 bp Feature: domain Description: restrict_AAA_1 Location: 6529-6916 bp Feature: domain Description: restrict_AAA_1 Location: 6529-691 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: RWLV01000011.1 (199913 bp)
Overview 1 RT 1: 30353-36272 bp Neighborhood of RT #1 [30353, 36272] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 30353-31075 bp Feature: domain Description: resist_ArsH Location: 30377-31031 bp Feature: domain Description: resist_ArsH Location: 30377-31031 bp Feature: gene Location: 31133-32392 bp Feature: domain Description: KOG0389 Location: 31163-31286 bp Feature: domain Description: KOG0389 Location: 31163-312 86 bp Feature: domain Description: SF2_C_SNF Location: 31832-32228 bp Feature: domain Description: SF2 _C_SNF Location: 31832 -32 2 2 8 bp Feature: gene Location: 32460-34178 bp Feature: domain Description: RVT_N Location: 32517-32754 bp Feature: domain Description: RVT_N Location: 32 517-32 754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32805-33456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 805-33456 bp Feature: domain Description: GIIM Note: maturase Location: 33510-33741 bp Feature: domain Description: GIIM Note: maturase Location: 33510-33741 bp Feature: domain Description: HNHc Note: nucleases Location: 33975-34131 bp Feature: domain Description: HNHc Note: nucleases Location: 33975-34131 bp Feature: gene Location: 34775-35830 bp Feature: domain Description: DEXHc_Snf Location: 34994-35249 bp Feature: domain Description: DEXHc_Snf Location: 34994-352 49 bp Feature: gene Location: 35967-36272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: RWLV01000009.1 (233574 bp)
Overview 1 RT 1: 133583-144830 bp 2 RT 2: 161089-169911 bp Neighborhood of RT #1 [133583, 144832] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [161089, 169940] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133583-134353 bp Feature: domain Description: NERD Location: 133682-134015 bp Feature: domain Description: NERD Location: 13 3 682-13 4015 bp Feature: domain Description: zf-C4_Topoisom Location: 134234-134348 bp Feature: domain Description: zf-C4_Topoisom Location: 13 423 4-13 43 48 bp Feature: gene Location: 134525-135646 bp Feature: domain Description: COG3177 Location: 134543-135635 bp Feature: domain Description: COG3 177 Location: 13 4543 -13 563 5 bp Feature: gene Location: 136369-138054 bp Feature: domain Description: RVT_N Location: 136426-136666 bp Feature: domain Description: RVT_N Location: 13 6426-13 6666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136714-137350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 6714-13 73 50 bp Feature: domain Description: GIIM Note: maturase Location: 137404-137635 bp Feature: domain Description: GIIM Note: maturase Location: 13 7404-13 763 5 bp Feature: domain Description: HNH Note: nucleases Location: 137887-138025 bp Feature: domain Description: HNH Note: nucleases Location: 13 7887-13 8025 bp Feature: gene Location: 139135-142872 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 139243-139900 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13 9243 -13 9900 bp Feature: domain Description: PRK09776 Location: 140113-140584 bp Feature: domain Description: PRK09776 Location: 140113 -140584 bp Feature: domain Description: PAS Location: 140641-141166 bp Feature: domain Description: PAS Location: 140641-141166 bp Feature: domain Description: PRK10060 Location: 141178-142822 bp Feature: domain Description: PRK10060 Location: 141178-142822 bp Feature: gene Location: 142979-144832 bp Feature: domain Description: PRK05658 Location: 142991-144830 bp Feature: domain Description: PRK05658 Location: 142991-14483 0 bp Feature: gene Location: 161089-162303 bp Feature: domain Description: PRK10770 Location: 161101-162295 bp Feature: domain Description: PRK10770 Location: 161101-162295 bp Feature: gene Location: 162362-165136 bp Feature: domain Description: LptD Location: 162557-165122 bp Feature: domain Description: LptD Location: 162557-165122 bp Feature: gene Location: 165269-166981 bp Feature: domain Description: RVT_N Location: 165326-165569 bp Feature: domain Description: RVT_N Location: 1653 26-165569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165614-166247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165614-166247 bp Feature: domain Description: YkfC Location: 166460-166610 bp Feature: domain Description: YkfC Location: 166460-166610 bp Feature: domain Description: HNH Note: nucleases Location: 166787-166925 bp Feature: domain Description: HNH Note: nucleases Location: 166787-166925 bp Feature: gene Location: 168253-169269 bp Feature: domain Description: COG3178 Location: 168256-169255 bp Feature: domain Description: COG3 178 Location: 168256-169255 bp Feature: gene Location: 169266-169940 bp Feature: domain Description: NTP_transferase_like_1 Location: 169272-169911 bp Feature: domain Description: NTP_transferase_like_1 Location: 169272-169911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)