myRT

myRT report for GCA_004370405.1_ASM437040v1

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Seq: RWMJ01000002.1 (739886 bp)
Overview 1 RT 1: 649313-659619 bp 2 RT 2: 675877-684715 bp Neighborhood of RT #1 [649313, 659621] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [675877, 684744] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 649313-650434 bp Feature: domain Description: COG3177 Location: 649331-650423 bp Feature: domain Description: COG31 77 Location: 649331 -650423 bp Feature: gene Location: 650693-650830 bp Feature: gene Location: 651158-652843 bp Feature: domain Description: RVT_N Location: 651215-651455 bp Feature: domain Description: RVT_N Location: 651 21 5-651 455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651503-652139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 503-6521 39 bp Feature: domain Description: GIIM Note: maturase Location: 652193-652424 bp Feature: domain Description: GIIM Note: maturase Location: 6521 93-652424 bp Feature: domain Description: HNH Note: nucleases Location: 652676-652814 bp Feature: domain Description: HNH Note: nucleases Location: 652676-65281 4 bp Feature: gene Location: 653924-657661 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 654032-654689 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 654032-654689 bp Feature: domain Description: PRK09776 Location: 654902-655373 bp Feature: domain Description: PRK09776 Location: 654902-655373 bp Feature: domain Description: PAS Location: 655430-655955 bp Feature: domain Description: PAS Location: 655430-655955 bp Feature: domain Description: PRK10060 Location: 655964-657611 bp Feature: domain Description: PRK1 0060 Location: 655964-65761 1 bp Feature: gene Location: 657768-659621 bp Feature: domain Description: PRK05658 Location: 657780-659619 bp Feature: domain Description: PRK05658 Location: 657780-65961 9 bp Feature: gene Location: 675877-677091 bp Feature: domain Description: PRK10770 Location: 675889-677083 bp Feature: domain Description: PRK1 0770 Location: 675889-677083 bp Feature: gene Location: 677150-679939 bp Feature: domain Description: LptD Location: 677345-679925 bp Feature: domain Description: LptD Location: 677345-679925 bp Feature: gene Location: 680072-681784 bp Feature: domain Description: RVT_N Location: 680129-680372 bp Feature: domain Description: RVT_N Location: 6801 29-680372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680417-681053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68041 7-681 053 bp Feature: domain Description: YkfC Location: 681263-681413 bp Feature: domain Description: YkfC Location: 681 263-681 41 3 bp Feature: domain Description: HNH Note: nucleases Location: 681590-681728 bp Feature: domain Description: HNH Note: nucleases Location: 681 590-681 728 bp Feature: gene Location: 683057-684073 bp Feature: domain Description: COG3178 Location: 683060-684059 bp Feature: domain Description: COG31 78 Location: 683060-684059 bp Feature: gene Location: 684070-684744 bp Feature: domain Description: NTP_transferase_like_1 Location: 684076-684715 bp Feature: domain Description: NTP_transferase_like_1 Location: 684076-68471 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: RWMJ01000004.1 (458708 bp)
Overview 1 RT 1: 454615-458706 bp Neighborhood of RT #1 [454615, 458705] HxlR PRK06333 RVT-UG2 COG3666 Feature: gene Location: 454615-455121 bp Feature: domain Description: HxlR Location: 454639-454957 bp Feature: domain Description: HxlR Location: 454639-454957 bp Feature: gene Location: 455230-456498 bp Feature: domain Description: PRK06333 Location: 455236-456493 bp Feature: domain Description: PRK06333 Location: 4552 36-456493 bp Feature: gene Location: 456997-458343 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 457246-458032 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4572 46-458032 bp Feature: gene Location: 458490-458705 bp Feature: domain Description: COG3666 Location: 458502-458706 bp Feature: domain Description: COG3666 Location: 458502 -458706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, COG3666 (Transposase )

Seq: RWMJ01000001.1 (1047540 bp)
Overview 1 RT 1: 709903-716778 bp Neighborhood of RT #1 [709903, 716861] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 709903-711447 bp Feature: domain Description: CHD Location: 710119-710533 bp Feature: domain Description: CHD Location: 710119-71053 3 bp Feature: domain Description: CHD Location: 710761-711250 bp Feature: domain Description: CHD Location: 710761-711250 bp Feature: gene Location: 712531-712710 bp Feature: gene Location: 713442-714710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713655-714312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713 655-7143 12 bp Feature: domain Description: GIIM Note: maturase Location: 714390-714612 bp Feature: domain Description: GIIM Note: maturase Location: 7143 90-714612 bp Feature: gene Location: 715099-715731 bp Feature: domain Description: DUF772 Location: 715240-715435 bp Feature: domain Description: DUF772 Location: 715240-71543 5 bp Feature: gene Location: 716034-716861 bp Feature: domain Description: ABC_phnC Location: 716064-716778 bp Feature: domain Description: ABC_phnC Location: 716064-716778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)