myRT

myRT report for GCA_004370895.1_ASM437089v1

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Seq: RWLM01000005.1 (454787 bp)
Overview 1 RT 1: 369714-380020 bp 2 RT 2: 396278-405116 bp Neighborhood of RT #1 [369714, 380022] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [396278, 405145] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 369714-370835 bp Feature: domain Description: COG3177 Location: 369732-370824 bp Feature: domain Description: COG31 77 Location: 369732-370824 bp Feature: gene Location: 371094-371231 bp Feature: gene Location: 371559-373244 bp Feature: domain Description: RVT_N Location: 371616-371856 bp Feature: domain Description: RVT_N Location: 371 61 6-371 856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371904-372540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 904-372540 bp Feature: domain Description: GIIM Note: maturase Location: 372594-372825 bp Feature: domain Description: GIIM Note: maturase Location: 372594-372825 bp Feature: domain Description: HNH Note: nucleases Location: 373077-373215 bp Feature: domain Description: HNH Note: nucleases Location: 373077-37321 5 bp Feature: gene Location: 374325-378062 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 374433-375090 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 374433-375090 bp Feature: domain Description: PRK09776 Location: 375303-375774 bp Feature: domain Description: PRK09776 Location: 375303-375774 bp Feature: domain Description: PAS Location: 375831-376356 bp Feature: domain Description: PAS Location: 375831 -376356 bp Feature: domain Description: PRK10060 Location: 376365-378012 bp Feature: domain Description: PRK1 0060 Location: 376365-37801 2 bp Feature: gene Location: 378169-380022 bp Feature: domain Description: PRK05658 Location: 378181-380020 bp Feature: domain Description: PRK05658 Location: 3781 81 -380020 bp Feature: gene Location: 396278-397492 bp Feature: domain Description: PRK10770 Location: 396290-397484 bp Feature: domain Description: PRK1 0770 Location: 396290-397484 bp Feature: gene Location: 397551-400340 bp Feature: domain Description: LptD Location: 397746-400326 bp Feature: domain Description: LptD Location: 397746-400326 bp Feature: gene Location: 400473-402185 bp Feature: domain Description: RVT_N Location: 400530-400773 bp Feature: domain Description: RVT_N Location: 400530-400773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400818-401454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40081 8-401 454 bp Feature: domain Description: YkfC Location: 401664-401814 bp Feature: domain Description: YkfC Location: 401 664-401 81 4 bp Feature: domain Description: HNH Note: nucleases Location: 401991-402129 bp Feature: domain Description: HNH Note: nucleases Location: 401 991 -4021 29 bp Feature: gene Location: 403458-404474 bp Feature: domain Description: COG3178 Location: 403461-404460 bp Feature: domain Description: COG31 78 Location: 403461 -404460 bp Feature: gene Location: 404471-405145 bp Feature: domain Description: NTP_transferase_like_1 Location: 404477-405116 bp Feature: domain Description: NTP_transferase_like_1 Location: 404477-4051 1 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: RWLM01000002.1 (732550 bp)
Overview 1 RT 1: 648924-655535 bp Neighborhood of RT #1 [648924, 655618] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 648924-650468 bp Feature: domain Description: CHD Location: 649140-649554 bp Feature: domain Description: CHD Location: 649140-649554 bp Feature: domain Description: CHD Location: 649782-650271 bp Feature: domain Description: CHD Location: 649782 -6502 71 bp Feature: gene Location: 651552-651731 bp Feature: gene Location: 652463-653731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652676-653333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652 676-653333 bp Feature: domain Description: GIIM Note: maturase Location: 653411-653633 bp Feature: domain Description: GIIM Note: maturase Location: 653411-653633 bp Feature: gene Location: 654120-654752 bp Feature: domain Description: DUF772 Location: 654261-654456 bp Feature: domain Description: DUF772 Location: 6542 61-654456 bp Feature: gene Location: 654791-655618 bp Feature: domain Description: ABC_phnC Location: 654821-655535 bp Feature: domain Description: ABC_phnC Location: 65482 1-655535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: RWLM01000004.1 (458012 bp)
Overview 1 RT 1: 453919-458010 bp Neighborhood of RT #1 [453919, 458009] HxlR PRK06333 RVT-UG2 COG3666 Feature: gene Location: 453919-454425 bp Feature: domain Description: HxlR Location: 453943-454261 bp Feature: domain Description: HxlR Location: 453 943 -454261 bp Feature: gene Location: 454534-455802 bp Feature: domain Description: PRK06333 Location: 454540-455797 bp Feature: domain Description: PRK063 3 3 Location: 454540-455797 bp Feature: gene Location: 456301-457647 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 456550-457336 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 456550-4573 3 6 bp Feature: gene Location: 457794-458009 bp Feature: domain Description: COG3666 Location: 457806-458010 bp Feature: domain Description: COG3 666 Location: 457806-458010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, COG3666 (Transposase )