myRT

myRT report for GCA_004372295.1_ASM437229v1

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Seq: RWPR01000004.1 (416245 bp)
Overview 1 RT 1: 330772-341078 bp 2 RT 2: 357336-366174 bp Neighborhood of RT #1 [330772, 341080] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [357336, 366203] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 330772-331893 bp Feature: domain Description: COG3177 Location: 330790-331882 bp Feature: domain Description: COG31 77 Location: 330790-331 882 bp Feature: gene Location: 332152-332289 bp Feature: gene Location: 332617-334302 bp Feature: domain Description: RVT_N Location: 332674-332914 bp Feature: domain Description: RVT_N Location: 332674-33291 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332962-333598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332962-333598 bp Feature: domain Description: GIIM Note: maturase Location: 333652-333883 bp Feature: domain Description: GIIM Note: maturase Location: 333652-333883 bp Feature: domain Description: HNH Note: nucleases Location: 334135-334273 bp Feature: domain Description: HNH Note: nucleases Location: 3341 35-334273 bp Feature: gene Location: 335383-339120 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 335491-336148 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 335491 -3361 48 bp Feature: domain Description: PRK09776 Location: 336361-336832 bp Feature: domain Description: PRK09776 Location: 336361 -336832 bp Feature: domain Description: PAS Location: 336889-337414 bp Feature: domain Description: PAS Location: 336889-33741 4 bp Feature: domain Description: PRK10060 Location: 337423-339070 bp Feature: domain Description: PRK1 0060 Location: 337423-339070 bp Feature: gene Location: 339227-341080 bp Feature: domain Description: PRK05658 Location: 339239-341078 bp Feature: domain Description: PRK05658 Location: 339239-341 078 bp Feature: gene Location: 357336-358550 bp Feature: domain Description: PRK10770 Location: 357348-358542 bp Feature: domain Description: PRK1 0770 Location: 357348-358542 bp Feature: gene Location: 358609-361398 bp Feature: domain Description: LptD Location: 358804-361384 bp Feature: domain Description: LptD Location: 358804-361 384 bp Feature: gene Location: 361531-363243 bp Feature: domain Description: RVT_N Location: 361588-361831 bp Feature: domain Description: RVT_N Location: 361 588-361 831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361876-362512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 876-36251 2 bp Feature: domain Description: YkfC Location: 362719-362872 bp Feature: domain Description: YkfC Location: 36271 9-362872 bp Feature: domain Description: HNH Note: nucleases Location: 363049-363187 bp Feature: domain Description: HNH Note: nucleases Location: 363049-3631 87 bp Feature: gene Location: 364516-365532 bp Feature: domain Description: COG3178 Location: 364519-365518 bp Feature: domain Description: COG31 78 Location: 36451 9-36551 8 bp Feature: gene Location: 365529-366203 bp Feature: domain Description: NTP_transferase_like_1 Location: 365535-366174 bp Feature: domain Description: NTP_transferase_like_1 Location: 365535-3661 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: RWPR01000002.1 (841594 bp)
Overview 1 RT 1: 504552-511801 bp Neighborhood of RT #1 [504552, 511863] HxlR PRK06333 RVT-UG2 YHI9 STN TonB-siderophor Feature: gene Location: 504552-505058 bp Feature: domain Description: HxlR Location: 504576-504894 bp Feature: domain Description: HxlR Location: 504576-504894 bp Feature: gene Location: 505167-506435 bp Feature: domain Description: PRK06333 Location: 505173-506430 bp Feature: domain Description: PRK06333 Location: 505173-506430 bp Feature: gene Location: 506934-508280 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 507183-507969 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 507183-507969 bp Feature: gene Location: 508464-509300 bp Feature: domain Description: YHI9 Location: 508476-509292 bp Feature: domain Description: YHI9 Location: 508476-5092 92 bp Feature: gene Location: 509461-511863 bp Feature: domain Description: STN Location: 509581-509734 bp Feature: domain Description: STN Location: 509581-509734 bp Feature: domain Description: TonB-siderophor Location: 509842-511801 bp Feature: domain Description: TonB-siderophor Location: 509842 -511801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783)