myRT

myRT report for GCA_004402105.1_ASM440210v1

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Seq: SOMJ01000037.1 Shigella sonnei strain AM23 GCID_CRU_0010_NODE_3.ctg_1, whole genome shotgun sequence (273591 bp)
Overview 1 RT 1: 126581-129907 bp Neighborhood of RT #1 [126581, 129907] FRG RVT-Retrons HTH_XRE Feature: gene Location: 126581-126730 bp Feature: gene Location: 126769-128133 bp Feature: domain Description: FRG Location: 127336-127621 bp Feature: domain Description: FRG Location: 1 27336-1 27621 bp Feature: gene Location: 128242-129192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128422-128965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 28422-1 28965 bp Feature: gene Location: 129158-129490 bp Feature: domain Description: HTH_XRE Location: 129185-129344 bp Feature: domain Description: HTH_XRE Location: 1 291 85-1 29344 bp Feature: gene Location: 129515-129907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: SOMJ01000083.1 Shigella sonnei strain AM23 GCID_CRU_0010_NODE_32.ctg_1, whole genome shotgun sequence (48668 bp)
Overview 1 RT 1: 28339-32630 bp Neighborhood of RT #1 [28339, 32630] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 28339-29601 bp Feature: domain Description: YesM Location: 28852-29593 bp Feature: domain Description: YesM Location: 2 8852 -2 9593 bp Feature: gene Location: 29631-29801 bp Feature: gene Location: 30151-30672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30157-30439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30157-30439 bp Feature: domain Description: GIIM Note: maturase Location: 30487-30667 bp Feature: domain Description: GIIM Note: maturase Location: 30487-30667 bp Feature: gene Location: 30700-31239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31030-31108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31030-31108 bp Feature: gene Location: 31270-31467 bp Feature: gene Location: 31725-32630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: SOMJ01000010.1 Shigella sonnei strain AM23 GCID_CRU_0010_NODE_9.ctg_1, whole genome shotgun sequence (162893 bp)
Overview 1 RT 1: 28816-35059 bp Neighborhood of RT #1 [28816, 35196] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28816-29082 bp Feature: domain Description: Phage_integrase Location: 28882-28978 bp Feature: domain Description: Phage_integrase Location: 28882-28978 bp Feature: gene Location: 29165-29635 bp Feature: gene Location: 29982-33191 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30510-30999 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0510-3 0999 bp Feature: domain Description: nitrilase Location: 32505-33102 bp Feature: domain Description: nitrilase Location: 3 2505-3 3 102 bp Feature: gene Location: 33486-34289 bp Feature: domain Description: AbiEi_3_N Location: 33519-33780 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 519-3 3 780 bp Feature: domain Description: AbiEi_3 Location: 33792-34248 bp Feature: domain Description: AbiEi_3 Location: 3 3 792-3 4248 bp Feature: gene Location: 34276-35196 bp Feature: domain Description: AbiEii Location: 34318-35059 bp Feature: domain Description: AbiEii Location: 3 43 18-3 5059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)