myRT

myRT report for GCA_004402115.1_ASM440211v1

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Seq: SOPU01000025.1 (10620 bp)
Overview 1 RT 1: 2504-5398 bp Neighborhood of RT #1 [2504, 5415] Pentapeptide RVT-GII COG3575 Feature: gene Location: 2504-2848 bp Feature: domain Description: Pentapeptide Location: 2636-2753 bp Feature: domain Description: Pentapeptide Location: 2636-2753 bp Feature: gene Location: 2841-3215 bp Feature: gene Location: 3420-4580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134-4572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 34-4572 bp Feature: gene Location: 4679-4819 bp Feature: gene Location: 4840-5415 bp Feature: domain Description: COG3575 Location: 4867-5398 bp Feature: domain Description: COG3575 Location: 4867-5398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), RVT-GII, COG3575 (Uncharacterized protein )

Seq: SOPU01000053.1 (391 bp)
Overview 1 RT 1: 1-382 bp Neighborhood of RT #1 [1, 390] RVT-GII Feature: gene Location: 1-390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SOPU01000078.1 (54947 bp)
Overview 1 RT 1: 7983-13421 bp Neighborhood of RT #1 [7983, 14062] PRK13877 Trypsin_2 RVT-Retrons Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 7983-8507 bp Feature: domain Description: PRK13877 Location: 8151-8370 bp Feature: domain Description: PRK13 877 Location: 8151-83 70 bp Feature: gene Location: 9018-9524 bp Feature: domain Description: Trypsin_2 Location: 9024-9429 bp Feature: domain Description: Trypsin_2 Location: 9024-9429 bp Feature: gene Location: 9521-10693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9668-10289 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9668-10289 bp Feature: gene Location: 11256-11564 bp Feature: gene Location: 11837-14062 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 12662-13421 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 12662-13 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13877 (conjugal transfer transcriptional regulator TraJ), Trypsin_2 (pfam13365), RVT-Retrons, Peptidases_S8_Subtilisin_like_2 (cd04847)

Seq: SOPU01000003.1 (512304 bp)
Overview 1 RT 1: 91071-95503 bp Neighborhood of RT #1 [91071, 95505] secF PRK11280 RVT-GII RVT-GII GIIM PRK10757 Feature: gene Location: 91071-91985 bp Feature: domain Description: secF Location: 91083-91938 bp Feature: domain Description: secF Location: 91083-91938 bp Feature: gene Location: 92106-92654 bp Feature: domain Description: PRK11280 Location: 92127-92631 bp Feature: domain Description: PRK11280 Location: 92127-92631 bp Feature: gene Location: 93158-93883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93368-93749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93368-9374 9 bp Feature: gene Location: 93883-94071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93892-93985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93892-93985 bp Feature: gene Location: 94090-94401 bp Feature: domain Description: GIIM Note: maturase Location: 94102-94261 bp Feature: domain Description: GIIM Note: maturase Location: 94 102-94 261 bp Feature: gene Location: 94690-95505 bp Feature: domain Description: PRK10757 Location: 94693-95503 bp Feature: domain Description: PRK10757 Location: 94 693-95503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT secF (PRK13022), PRK11280 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), PRK10757 (inositol-1-monophosphatase)

Seq: SOPU01000024.1 (270567 bp)
Overview 1 RT 1: 267180-270410 bp Neighborhood of RT #1 [267180, 270454] OafA TnpB_IS66 RVT-GII GIIM Feature: gene Location: 267180-268373 bp Feature: domain Description: OafA Location: 267201-268296 bp Feature: domain Description: OafA Location: 267201-268296 bp Feature: gene Location: 268537-268842 bp Feature: domain Description: TnpB_IS66 Location: 268564-268717 bp Feature: domain Description: TnpB_IS66 Location: 2685 64-268717 bp Feature: gene Location: 269249-270454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269453-270110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26945 3-270110 bp Feature: domain Description: GIIM Note: maturase Location: 270188-270410 bp Feature: domain Description: GIIM Note: maturase Location: 270188-270410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: SOPU01000060.1 (488 bp)
Overview 1 RT 1: 1-487 bp Neighborhood of RT #1 [1, 486] RVT_N RVT-GII Feature: gene Location: 1-486 bp Feature: domain Description: RVT_N Location: 112-355 bp Feature: domain Description: RVT_N Location: 112-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SOPU01000061.1 (488 bp)
Overview 1 RT 1: 1-487 bp Neighborhood of RT #1 [1, 486] RVT_N RVT-GII Feature: gene Location: 1-486 bp Feature: domain Description: RVT_N Location: 112-355 bp Feature: domain Description: RVT_N Location: 112-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SOPU01000067.1 (900 bp)
Overview 1 RT 1: 3-744 bp Neighborhood of RT #1 [3, 782] RVT-GII GIIM HNHc Feature: gene Location: 3-782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-90 bp Feature: domain Description: GIIM Note: maturase Location: 144-375 bp Feature: domain Description: GIIM Note: maturase Location: 144-375 bp Feature: domain Description: HNHc Note: nucleases Location: 603-744 bp Feature: domain Description: HNHc Note: nucleases Location: 603-744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SOPU01000028.1 (77053 bp)
Overview 1 RT 1: 75453-76917 bp Neighborhood of RT #1 [75453, 77051] GIIM HNHc RVT-GII Feature: gene Location: 75453-75950 bp Feature: gene Location: 76046-76693 bp Feature: domain Description: GIIM Note: maturase Location: 76067-76262 bp Feature: domain Description: GIIM Note: maturase Location: 76067-76262 bp Feature: domain Description: HNHc Note: nucleases Location: 76481-76646 bp Feature: domain Description: HNHc Note: nucleases Location: 76481-76646 bp Feature: gene Location: 76572-77051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76578-76917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76578-769 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII

Seq: SOPU01000010.1 (607 bp)
Overview 1 RT 1: 3-559 bp Neighborhood of RT #1 [3, 606] RVT-GII Feature: gene Location: 3-170 bp Feature: gene Location: 229-606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SOPU01000066.1 (817 bp)
Overview 1 RT 1: 63-816 bp Neighborhood of RT #1 [63, 815] RVT_N RVT-GII Feature: gene Location: 63-815 bp Feature: domain Description: RVT_N Location: 120-363 bp Feature: domain Description: RVT_N Location: 120-363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII