myRT

myRT report for GCA_004402975.1_ASM440297v1

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Seq: SNVI01000005.1 (870380 bp)
Overview 1 RT 1: 535167-541021 bp 2 RT 2: 804751-808623 bp Neighborhood of RT #1 [535167, 541021] 4RHOD_Repeat_2 4RHOD_Repeat_2 4RHOD_Repeat_2 4RHOD_Repeats PBP2_polar_AA RVT-Retrons Neighborhood of RT #2 [804751, 808623] RVT-GII GIIM Feature: gene Location: 535167-536801 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 535182-535485 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 5351 82-535485 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 535536-535860 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 535536-535860 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 536013-536244 bp Feature: domain Description: 4RHOD_Repeat_2 Location: 53601 3-536244 bp Feature: domain Description: 4RHOD_Repeats Location: 536358-536586 bp Feature: domain Description: 4RHOD_Repeats Location: 536358-536586 bp Feature: gene Location: 536814-537926 bp Feature: domain Description: PBP2_polar_AA Location: 536919-537522 bp Feature: domain Description: PBP2_polar_AA Location: 53691 9-537522 bp Feature: gene Location: 538674-539621 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 538791-539382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 538791 -539382 bp Feature: gene Location: 539618-540541 bp Feature: gene Location: 540782-541021 bp Feature: gene Location: 804751-804915 bp Feature: gene Location: 804929-805219 bp Feature: gene Location: 805758-807026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806007-806670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806007-806670 bp Feature: domain Description: GIIM Note: maturase Location: 806739-806955 bp Feature: domain Description: GIIM Note: maturase Location: 806739-806955 bp Feature: gene Location: 807265-807783 bp Feature: gene Location: 807862-808623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 4RHOD_Repeat_2 (cd01533), 4RHOD_Repeats (cd01529), PBP2_polar_AA (cd13693), RVT-Retrons, RVT-GII, GIIM (pfam08388)

Seq: SNVI01000008.1 (873795 bp)
Overview 1 RT 1: 639649-644343 bp Neighborhood of RT #1 [639649, 644343] TktA2 RVT-GII GIIM COG3547 Feature: gene Location: 639649-640650 bp Feature: domain Description: TktA2 Location: 639727-640645 bp Feature: domain Description: TktA2 Location: 63972 7-640645 bp Feature: gene Location: 640817-640969 bp Feature: gene Location: 641039-642607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641567-642221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641567-642 2 2 1 bp Feature: domain Description: GIIM Note: maturase Location: 642305-642509 bp Feature: domain Description: GIIM Note: maturase Location: 642 305-642 509 bp Feature: gene Location: 643080-644093 bp Feature: domain Description: COG3547 Location: 643092-644046 bp Feature: domain Description: COG3547 Location: 643092 -644046 bp Feature: gene Location: 644182-644343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TktA2 (COG3958), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: SNVI01000004.1 (171751 bp)
Overview 1 RT 1: 69730-79790 bp Neighborhood of RT #1 [69730, 79852] FolB Rve RVT-GII purU GcvT COG3547 RVT-GII IS5 COG3547 Feature: gene Location: 69730-70134 bp Feature: domain Description: FolB Location: 69772-70114 bp Feature: domain Description: FolB Location: 69772-70114 bp Feature: gene Location: 70224-70955 bp Feature: domain Description: Rve Location: 70251-70884 bp Feature: domain Description: Rve Location: 70251-70884 bp Feature: gene Location: 71204-71584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71210-71444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71210-71444 bp Feature: gene Location: 71898-72815 bp Feature: domain Description: purU Location: 71970-72810 bp Feature: domain Description: purU Location: 71970-72810 bp Feature: gene Location: 72815-74278 bp Feature: domain Description: GcvT Location: 72929-74132 bp Feature: domain Description: GcvT Location: 72929-7413 2 bp Feature: gene Location: 75794-75928 bp Feature: gene Location: 76320-77024 bp Feature: domain Description: COG3547 Location: 76341-76971 bp Feature: domain Description: COG3 547 Location: 763 41-76971 bp Feature: gene Location: 77098-77325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77101-77269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77101-77269 bp Feature: gene Location: 77860-78495 bp Feature: domain Description: IS5 Location: 78049-78460 bp Feature: domain Description: IS5 Location: 78049-78460 bp Feature: gene Location: 78707-79852 bp Feature: domain Description: COG3547 Location: 78914-79790 bp Feature: domain Description: COG3 547 Location: 78914-79790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FolB (smart00905), Rve (COG3316), RVT-GII, purU (PRK13010), GcvT (COG0404), COG3547 (Transposase ), IS5 (COG3039)

Seq: SNVI01000001.1 (4414879 bp)
Overview 1 RT 1: 2826891-2833709 bp 2 RT 2: 3380482-3388290 bp Neighborhood of RT #1 [2826891, 2833709] 2A0305 AraC GyrI-like RVT-Retrons Neighborhood of RT #2 [3380482, 3388292] DciA RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 2826891-2828411 bp Feature: domain Description: 2A0305 Location: 2827053-2828397 bp Feature: domain Description: 2A0305 Location: 2827053-2828397 bp Feature: gene Location: 2828564-2829430 bp Feature: domain Description: AraC Location: 2828582-2828909 bp Feature: domain Description: AraC Location: 2828582-2828909 bp Feature: domain Description: GyrI-like Location: 2828963-2829425 bp Feature: domain Description: GyrI-like Location: 2828963-28294 25 bp Feature: gene Location: 2830093-2831460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2830558-2831197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2830558-2831197 bp Feature: gene Location: 2831489-2832250 bp Feature: gene Location: 2832297-2833709 bp Feature: gene Location: 3380482-3381036 bp Feature: domain Description: DciA Location: 3380620-3380875 bp Feature: domain Description: DciA Location: 3380620-3380875 bp Feature: gene Location: 3381229-3381540 bp Feature: gene Location: 3382590-3383888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382593-3383181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382593-3383181 bp Feature: domain Description: GIIM Note: maturase Location: 3383235-3383466 bp Feature: domain Description: GIIM Note: maturase Location: 3383235-33834 66 bp Feature: domain Description: HNHc Note: nucleases Location: 3383682-3383850 bp Feature: domain Description: HNHc Note: nucleases Location: 3383682-3383850 bp Feature: gene Location: 3384040-3386901 bp Feature: domain Description: PRK12904 Location: 3384103-3386893 bp Feature: domain Description: PRK12904 Location: 3384 103-3386893 bp Feature: gene Location: 3387051-3388292 bp Feature: domain Description: argJ Location: 3387090-3388290 bp Feature: domain Description: argJ Location: 3387090-3388290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), AraC (COG2207), GyrI-like (pfam06445), RVT-Retrons, DciA, RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)