myRT

myRT report for GCA_004523755.1_ASM452375v1

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Seq: SOMS01000002.1 (315912 bp)
Overview 1 RT 1: 306995-310884 bp Neighborhood of RT #1 [306995, 310889] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 306995-307348 bp Feature: gene Location: 307707-307904 bp Feature: gene Location: 308073-308507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308265-308481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308265-308481 bp Feature: gene Location: 308480-309331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308483-308891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308483-308891 bp Feature: domain Description: GIIM Note: maturase Location: 308939-309161 bp Feature: domain Description: GIIM Note: maturase Location: 308939-3091 61 bp Feature: gene Location: 309509-309727 bp Feature: gene Location: 309858-310889 bp Feature: domain Description: LacI Location: 309900-310035 bp Feature: domain Description: LacI Location: 309900-31 0035 bp Feature: domain Description: PBP1_GntR Location: 310074-310884 bp Feature: domain Description: PBP1 _GntR Location: 31 0074-31 0884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: SOMS01000052.1 (8269 bp)
Overview 1 RT 1: 162-2448 bp Neighborhood of RT #1 [162, 2448] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 162-1886 bp Feature: domain Description: RVT_N Location: 219-456 bp Feature: domain Description: RVT_N Location: 2 19-456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1155 bp Feature: domain Description: GIIM Note: maturase Location: 1209-1440 bp Feature: domain Description: GIIM Note: maturase Location: 12 09-1440 bp Feature: domain Description: HNHc Note: nucleases Location: 1671-1830 bp Feature: domain Description: HNHc Note: nucleases Location: 1671-1830 bp Feature: gene Location: 1927-2067 bp Feature: gene Location: 2149-2448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SOMS01000047.1 (11703 bp)
Overview 1 RT 1: 8406-11636 bp Neighborhood of RT #1 [8406, 11701] COG2085 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8406-8819 bp Feature: domain Description: COG2085 Location: 8505-8652 bp Feature: domain Description: COG2085 Location: 8505-8652 bp Feature: gene Location: 8985-9149 bp Feature: domain Description: PHA02517 Location: 8988-9078 bp Feature: domain Description: PHA02517 Location: 8988-9078 bp Feature: gene Location: 9314-10837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9587-10319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9587-103 19 bp Feature: domain Description: GIIM Note: maturase Location: 10394-10592 bp Feature: domain Description: GIIM Note: maturase Location: 103 94-10592 bp Feature: gene Location: 11429-11701 bp Feature: domain Description: PHA02517 Location: 11432-11636 bp Feature: domain Description: PHA02517 Location: 1143 2-1163 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: SOMS01000046.1 (12911 bp)
Overview 1 RT 1: 40-3633 bp Neighborhood of RT #1 [40, 3633] IS285 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 40-186 bp Feature: domain Description: IS285 Location: 49-178 bp Feature: domain Description: IS285 Location: 4 9-178 bp Feature: gene Location: 704-985 bp Feature: gene Location: 1566-2759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1716-2367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1716-2367 bp Feature: domain Description: GIIM Note: maturase Location: 2445-2670 bp Feature: domain Description: GIIM Note: maturase Location: 24 4 5-2670 bp Feature: gene Location: 2860-3006 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2872-2983 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2872-2983 bp Feature: gene Location: 3430-3633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: SOMS01000011.1 (183955 bp)
Overview 1 RT 1: 130818-134700 bp Neighborhood of RT #1 [130818, 134705] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130818-131534 bp Feature: domain Description: rph Location: 130821-131529 bp Feature: domain Description: rph Location: 130821-1315 29 bp Feature: gene Location: 131585-132241 bp Feature: domain Description: pyrE Location: 131603-132236 bp Feature: domain Description: pyrE Location: 131603-132236 bp Feature: gene Location: 132539-133498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132674-133223 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132674-133223 bp Feature: gene Location: 133544-134140 bp Feature: domain Description: slmA Location: 133550-134126 bp Feature: domain Description: slmA Location: 1335 5 0-134126 bp Feature: gene Location: 134247-134705 bp Feature: domain Description: dut Location: 134253-134700 bp Feature: domain Description: dut Location: 13425 3-134700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: SOMS01000017.1 (93793 bp)
Overview 1 RT 1: 29222-33241 bp 2 RT 2: 48964-52877 bp Neighborhood of RT #1 [29222, 33241] PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #2 [48964, 52877] RepL RVT-AbiP2 PRK10947 Feature: gene Location: 29222-29356 bp Feature: gene Location: 29784-31484 bp Feature: domain Description: PRK13889 Location: 29988-30564 bp Feature: domain Description: PRK13889 Location: 29988-3056 4 bp Feature: gene Location: 31561-32661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31702-32254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31702-32254 bp Feature: gene Location: 32654-32935 bp Feature: domain Description: HTH_XRE Location: 32669-32834 bp Feature: domain Description: HTH_XRE Location: 326 6 9-32834 bp Feature: gene Location: 33026-33241 bp Feature: gene Location: 48964-49104 bp Feature: gene Location: 49537-50082 bp Feature: domain Description: RepL Location: 49660-50032 bp Feature: domain Description: RepL Location: 496 6 0-50032 bp Feature: gene Location: 50438-51982 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 50867-51326 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5086 7-51326 bp Feature: gene Location: 52179-52439 bp Feature: domain Description: PRK10947 Location: 52194-52416 bp Feature: domain Description: PRK10947 Location: 52194-52416 bp Feature: gene Location: 52509-52877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530), RepL (pfam05732), RVT-AbiP2, PRK10947 (DNA-binding transcriptional regulator H-NS)