myRT

myRT report for GCA_004553245.1_ASM455324v1

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Seq: SFMA01000133.1 (5403 bp)
Overview 1 RT 1: 1011-5190 bp Neighborhood of RT #1 [1011, 5219] DUF5131 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1011-1736 bp Feature: domain Description: DUF5131 Location: 1020-1731 bp Feature: domain Description: DUF51 31 Location: 1 020-1 731 bp Feature: gene Location: 1747-2118 bp Feature: gene Location: 2177-3151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2510-3125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 0-31 25 bp Feature: gene Location: 3155-3565 bp Feature: domain Description: GIIM Note: maturase Location: 3185-3401 bp Feature: domain Description: GIIM Note: maturase Location: 31 85-3401 bp Feature: gene Location: 3666-5219 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4197-5055 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41 97-5055 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5076-5190 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5076-51 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: SFMA01000008.1 (120666 bp)
Overview 1 RT 1: 48483-53764 bp Neighborhood of RT #1 [48483, 53764] RVT-DGRs Feature: gene Location: 48483-51008 bp Feature: gene Location: 51171-51317 bp Feature: gene Location: 51539-52843 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51752-52349 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51752 -52 349 bp Feature: gene Location: 52849-53334 bp Feature: gene Location: 53522-53764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SFMA01000093.1 (8864 bp)
Overview 1 RT 1: 3823-7034 bp Neighborhood of RT #1 [3823, 7034] RVT-DGRs Feature: gene Location: 3823-4368 bp Feature: gene Location: 4613-4927 bp Feature: gene Location: 4917-6239 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5349-5955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53 49-5955 bp Feature: gene Location: 6289-6468 bp Feature: gene Location: 6477-7034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SFMA01000120.1 (9008 bp)
Overview 1 RT 1: 3629-8928 bp Neighborhood of RT #1 [3629, 8928] VirD4 Maff2 RVT-GII HNHc Feature: gene Location: 3629-5398 bp Feature: domain Description: VirD4 Location: 3848-5279 bp Feature: domain Description: VirD4 Location: 384 8-5279 bp Feature: gene Location: 5640-5771 bp Feature: domain Description: Maff2 Location: 5643-5769 bp Feature: domain Description: Maff2 Location: 564 3-5769 bp Feature: gene Location: 6491-8377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6824-7562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6824 -7562 bp Feature: domain Description: HNHc Note: nucleases Location: 8111-8261 bp Feature: domain Description: HNHc Note: nucleases Location: 8111-8261 bp Feature: gene Location: 8638-8928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: SFMA01000089.1 (10679 bp)
Overview 1 RT 1: 850-5391 bp Neighborhood of RT #1 [850, 5391] RVT-AbiP2 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 850-1179 bp Feature: gene Location: 1243-1968 bp Feature: gene Location: 2094-3617 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2523-2979 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 25 23-2979 bp Feature: gene Location: 3624-4148 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3660-3996 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3660-3996 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4020-4131 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4020-4131 bp Feature: gene Location: 4279-5391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)