myRT

myRT report for GCA_004557835.1_ASM455783v1

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Seq: SFFO01000252.1 (4902 bp)
Overview 1 RT 1: 199-4562 bp Neighborhood of RT #1 [199, 4615] RVT-GII HNHc TraG-D_C DUF4263 Feature: gene Location: 199-405 bp Feature: gene Location: 860-1075 bp Feature: gene Location: 1154-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 469-1 772 bp Feature: domain Description: HNHc Note: nucleases Location: 2141-2309 bp Feature: domain Description: HNHc Note: nucleases Location: 21 41 -2309 bp Feature: gene Location: 2550-3188 bp Feature: domain Description: TraG-D_C Location: 2727-3066 bp Feature: domain Description: TraG-D_C Location: 2727-3066 bp Feature: gene Location: 3404-4615 bp Feature: domain Description: DUF4263 Location: 4073-4562 bp Feature: domain Description: DUF4263 Location: 4073-4562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696), DUF4263 (pfam14082)

Seq: SFFO01000140.1 (8606 bp)
Overview 1 RT 1: 1-3992 bp Neighborhood of RT #1 [1, 4021] group_II_RT_mat RVT-UG19 MutT_pyrophosphohydrolase PLDc_N_DEXD_b1 SSL2 DUF3427 Feature: gene Location: 1-450 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37-295 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37-2 95 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 367-451 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 367-451 bp Feature: gene Location: 477-866 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 483-846 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 483-846 bp Feature: gene Location: 866-4021 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 1280-1706 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 12 80-1706 bp Feature: domain Description: SSL2 Location: 1769-2909 bp Feature: domain Description: SSL2 Location: 1769-2 909 bp Feature: domain Description: DUF3427 Location: 3548-3992 bp Feature: domain Description: DUF342 7 Location: 3548-3992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG19, MutT_pyrophosphohydrolase (cd03425), PLDc_N_DEXD_b1 (cd09203), SSL2 (COG1061), DUF3427 (pfam11907)

Seq: SFFO01000199.1 (6410 bp)
Overview 1 RT 1: 1414-6112 bp Neighborhood of RT #1 [1414, 6261] ISOPREN_C2_like RVT_N RVT-GII GIIM HTH_28 rve_3 Feature: gene Location: 1414-1782 bp Feature: gene Location: 1820-2659 bp Feature: domain Description: ISOPREN_C2_like Location: 2024-2336 bp Feature: domain Description: ISOPREN_C2_like Location: 2024-23 3 6 bp Feature: gene Location: 3233-4780 bp Feature: domain Description: RVT_N Location: 3302-3545 bp Feature: domain Description: RVT_N Location: 3 3 02-3 545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590-4235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 590-423 5 bp Feature: domain Description: GIIM Note: maturase Location: 4286-4523 bp Feature: domain Description: GIIM Note: maturase Location: 4286-4523 bp Feature: gene Location: 5271-5525 bp Feature: domain Description: HTH_28 Location: 5331-5451 bp Feature: domain Description: HTH_28 Location: 53 3 1-5451 bp Feature: gene Location: 5743-6261 bp Feature: domain Description: rve_3 Location: 5917-6112 bp Feature: domain Description: rve_3 Location: 5917-6112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ISOPREN_C2_like (cl08267), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518), rve_3 (pfam13683)