myRT

myRT report for GCA_004562005.1_ASM456200v1

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Seq: SFSB01000060.1 (25825 bp)
Overview 1 RT 1: 1041-13051 bp Neighborhood of RT #1 [1041, 13515] YodL LPD16 DUF4316 LPD25 RVT_N RVT-GII GIIM YtxK COG4646 Feature: gene Location: 1041-3791 bp Feature: domain Description: YodL Location: 1821-2115 bp Feature: domain Description: YodL Location: 1 821 -21 1 5 bp Feature: domain Description: LPD16 Location: 2145-2367 bp Feature: domain Description: LPD1 6 Location: 21 45-2367 bp Feature: domain Description: DUF4316 Location: 2415-2499 bp Feature: domain Description: DUF431 6 Location: 241 5-2499 bp Feature: domain Description: LPD25 Location: 3108-3405 bp Feature: domain Description: LPD25 Location: 31 08-3405 bp Feature: gene Location: 3873-4856 bp Feature: gene Location: 4861-6531 bp Feature: domain Description: RVT_N Location: 4906-5149 bp Feature: domain Description: RVT_N Location: 4906-51 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5194-5842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 94-5842 bp Feature: domain Description: GIIM Note: maturase Location: 5896-6127 bp Feature: domain Description: GIIM Note: maturase Location: 5896-61 27 bp Feature: gene Location: 6607-6753 bp Feature: gene Location: 7111-13515 bp Feature: domain Description: YtxK Location: 9817-10420 bp Feature: domain Description: YtxK Location: 981 7-1 0420 bp Feature: domain Description: COG4646 Location: 10486-13051 bp Feature: domain Description: COG4646 Location: 1 0486-1 3051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: SFSB01000003.1 (135713 bp)
Overview 1 RT 1: 70140-76813 bp Neighborhood of RT #1 [70140, 76827] cls Peptidases_S8_1 RVT-GII GIIM PRK11824 Feature: gene Location: 70140-71675 bp Feature: domain Description: cls Location: 70263-71673 bp Feature: domain Description: cls Location: 702 63-71673 bp Feature: gene Location: 71726-72709 bp Feature: domain Description: Peptidases_S8_1 Location: 71861-72638 bp Feature: domain Description: Peptidases_S8_1 Location: 71861-72 638 bp Feature: gene Location: 72804-74198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73122-73746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7312 2 -73746 bp Feature: domain Description: GIIM Note: maturase Location: 73803-74013 bp Feature: domain Description: GIIM Note: maturase Location: 73803-74013 bp Feature: gene Location: 74326-74526 bp Feature: gene Location: 74734-76827 bp Feature: domain Description: PRK11824 Location: 74746-76813 bp Feature: domain Description: PRK1182 4 Location: 74746-76813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cls, Peptidases_S8_1 (cd07487), RVT-GII, GIIM (pfam08388), PRK11824 (polynucleotide phosphorylase/polyadenylase; Provisional)

Seq: SFSB01000142.1 (2692 bp)
Overview 1 RT 1: 91-2691 bp Neighborhood of RT #1 [91, 2691] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 91-1881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 64-1174 bp Feature: domain Description: Intron_maturas2 Location: 1351-1543 bp Feature: domain Description: Intron_maturas2 Location: 13 51-1543 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-1861 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-1861 bp Feature: gene Location: 1897-2355 bp Feature: gene Location: 2509-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SFSB01000020.1 (49516 bp)
Overview 1 RT 1: 570-5999 bp Neighborhood of RT #1 [570, 5999] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 570-737 bp Feature: gene Location: 820-2847 bp Feature: domain Description: SR_TndX_transposase Location: 841-1258 bp Feature: domain Description: SR_TndX_transposase Location: 84 1-1258 bp Feature: domain Description: Recombinase Location: 1360-1720 bp Feature: domain Description: Recombinase Location: 1360-1720 bp Feature: domain Description: Zn_ribbon_recom Location: 1768-1957 bp Feature: domain Description: Zn_ribbon_recom Location: 1768-1957 bp Feature: domain Description: DUF4368 Location: 2236-2425 bp Feature: domain Description: DUF4 368 Location: 2236-24 25 bp Feature: gene Location: 3046-4869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3310-4132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3310-4 132 bp Feature: domain Description: Intron_maturas2 Location: 4207-4513 bp Feature: domain Description: Intron_maturas2 Location: 4 207-4 513 bp Feature: domain Description: HNHc Note: nucleases Location: 4690-4831 bp Feature: domain Description: HNHc Note: nucleases Location: 4 690-4 831 bp Feature: gene Location: 5022-5189 bp Feature: gene Location: 5430-5999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SFSB01000094.1 (6482 bp)
Overview 1 RT 1: 4985-6480 bp Neighborhood of RT #1 [4985, 6479] rpmI rplT RVT-GII Feature: gene Location: 4985-5182 bp Feature: domain Description: rpmI Location: 4988-5174 bp Feature: domain Description: rpmI Location: 4988-5 174 bp Feature: gene Location: 5222-5566 bp Feature: domain Description: rplT Location: 5231-5564 bp Feature: domain Description: rplT Location: 5 231-5 5 64 bp Feature: gene Location: 6060-6479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402-6480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402-6480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmI (PRK00172), rplT (PRK05185), RVT-GII

Seq: SFSB01000043.1 (61752 bp)
Overview 1 RT 1: 52004-55289 bp Neighborhood of RT #1 [52004, 55309] RVT-DGRs Phage_XkdX Feature: gene Location: 52004-53245 bp Feature: gene Location: 53456-53632 bp Feature: gene Location: 53706-54995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53967-54594 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5396 7-54594 bp Feature: gene Location: 54841-55155 bp Feature: gene Location: 55157-55309 bp Feature: domain Description: Phage_XkdX Location: 55178-55289 bp Feature: domain Description: Phage_XkdX Location: 55178-55289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: SFSB01000026.1 (83016 bp)
Overview 1 RT 1: 29803-32228 bp Neighborhood of RT #1 [29803, 32266] Phage_holin_4_1 RVT-DGRs PHA00653 Avd_like Feature: gene Location: 29803-30294 bp Feature: domain Description: Phage_holin_4_1 Location: 29842-30205 bp Feature: domain Description: Phage_holin_4_1 Location: 29842-30205 bp Feature: gene Location: 30300-30470 bp Feature: gene Location: 30496-31572 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30733-31354 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 307 33-31354 bp Feature: gene Location: 31657-31890 bp Feature: domain Description: PHA00653 Location: 31678-31810 bp Feature: domain Description: PHA00653 Location: 3167 8-31810 bp Feature: gene Location: 31895-32266 bp Feature: domain Description: Avd_like Location: 31925-32228 bp Feature: domain Description: Avd_like Location: 31925-32228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, PHA00653 (mtd;major tropism determinant), Avd_like (cd16376)

Seq: SFSB01000004.1 (132017 bp)
Overview 1 RT 1: 35722-38317 bp Neighborhood of RT #1 [35722, 38322] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 35722-35937 bp Feature: domain Description: Phage_holin_Dp1 Location: 35731-35917 bp Feature: domain Description: Phage_holin_Dp1 Location: 35731-35917 bp Feature: gene Location: 35924-36259 bp Feature: gene Location: 36285-37481 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36480-37203 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3648 0-37203 bp Feature: gene Location: 37694-38182 bp Feature: gene Location: 38179-38322 bp Feature: domain Description: Phage_XkdX Location: 38200-38317 bp Feature: domain Description: Phage_XkdX Location: 38 200-38 317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: SFSB01000152.1 (2378 bp)
Overview 1 RT 1: 623-1895 bp Neighborhood of RT #1 [623, 2260] RVT_N RVT-GII GIIM Feature: gene Location: 623-2260 bp Feature: domain Description: RVT_N Location: 674-917 bp Feature: domain Description: RVT_N Location: 674-9 17 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 62-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1661-1895 bp Feature: domain Description: GIIM Note: maturase Location: 1661-189 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)