myRT

myRT report for GCA_004566305.1_ASM456630v1

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Seq: SPLC01000329.1 (14445 bp)
Overview 1 RT 1: 2-5521 bp 2 RT 2: 8431-14443 bp Neighborhood of RT #1 [2, 5769] PRK09692 RVT-UG8 RVT-UG3 XerC HTH_17 Neighborhood of RT #2 [8431, 14442] RVT-UG1 PRK09692 Feature: gene Location: 2-169 bp Feature: domain Description: PRK09692 Location: 5-167 bp Feature: domain Description: PRK09692 Location: 5-1 67 bp Feature: gene Location: 482-679 bp Feature: gene Location: 707-2734 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1286-1730 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 286-1 730 bp Feature: gene Location: 2735-3997 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3053-3524 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3053-3524 bp Feature: gene Location: 4198-5289 bp Feature: domain Description: XerC Location: 4300-5212 bp Feature: domain Description: XerC Location: 4300-521 2 bp Feature: gene Location: 5338-5769 bp Feature: domain Description: HTH_17 Location: 5386-5521 bp Feature: domain Description: HTH_1 7 Location: 5386-5521 bp Feature: gene Location: 8431-9048 bp Feature: gene Location: 9055-9369 bp Feature: gene Location: 9457-12855 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10129-10651 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 01 29-1 0651 bp Feature: gene Location: 13543-14442 bp Feature: domain Description: PRK09692 Location: 13546-14443 bp Feature: domain Description: PRK09692 Location: 1 3546-1 4443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG8, RVT-UG3, XerC (COG4973), HTH_17 (pfam12728), RVT-UG1

Seq: SPLC01000099.1 (4413 bp)
Overview 1 RT 1: 3-4410 bp Neighborhood of RT #1 [3, 4410] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 3-650 bp Feature: domain Description: TIGR02646 Location: 90-534 bp Feature: domain Description: TIGR02 646 Location: 90-534 bp Feature: gene Location: 655-2292 bp Feature: domain Description: COG3950 Location: 865-2161 bp Feature: domain Description: COG3950 Location: 865-2 161 bp Feature: gene Location: 2285-3253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2429-3014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 42 9-3014 bp Feature: gene Location: 3508-4410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: SPLC01000108.1 (2526 bp)
Overview 1 RT 1: 164-2519 bp Neighborhood of RT #1 [164, 2524] RVT_N RVT-GII GIIM PRK09051 Feature: gene Location: 164-1636 bp Feature: domain Description: RVT_N Location: 212-455 bp Feature: domain Description: RVT_N Location: 212-455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1127 bp Feature: domain Description: GIIM Note: maturase Location: 1184-1412 bp Feature: domain Description: GIIM Note: maturase Location: 1184-1412 bp Feature: gene Location: 1649-1963 bp Feature: gene Location: 2333-2524 bp Feature: domain Description: PRK09051 Location: 2336-2519 bp Feature: domain Description: PRK09051 Location: 23 3 6-2519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK09051 (beta-ketothiolase BktB)

Seq: SPLC01000266.1 (2801 bp)
Overview 1 RT 1: 378-2407 bp Neighborhood of RT #1 [378, 2799] rplN RICIN ETX_MTX2 RVT-GII Feature: gene Location: 378-746 bp Feature: domain Description: rplN Location: 381-744 bp Feature: domain Description: rplN Location: 381-74 4 bp Feature: gene Location: 1137-2042 bp Feature: domain Description: RICIN Location: 1218-1539 bp Feature: domain Description: RICIN Location: 1218-1539 bp Feature: domain Description: ETX_MTX2 Location: 1611-1941 bp Feature: domain Description: ETX_MTX2 Location: 1611-194 1 bp Feature: gene Location: 2173-2799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-24 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplN (PRK05483), RICIN (smart00458), ETX_MTX2 (pfam03318), RVT-GII

Seq: SPLC01000007.1 (7413 bp)
Overview 1 RT 1: 1-6246 bp Neighborhood of RT #1 [1, 6272] DUF3427 RVT-UG1 5-nucleotidase Feature: gene Location: 1-1035 bp Feature: domain Description: DUF3427 Location: 226-1012 bp Feature: domain Description: DUF3427 Location: 226-1012 bp Feature: gene Location: 1066-4824 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1717-2206 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1717-2206 bp Feature: gene Location: 4873-5070 bp Feature: gene Location: 5328-6272 bp Feature: domain Description: 5-nucleotidase Location: 5442-6246 bp Feature: domain Description: 5 -nucleotidase Location: 5 442-6246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3427 (pfam11907), RVT-UG1, 5-nucleotidase (pfam06189)