myRT

myRT report for GCA_004566415.1_ASM456641v1

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Seq: CM017123.1 (150156 bp)
Overview 1 RT 1: 35628-39340 bp 2 RT 2: 120149-124524 bp Neighborhood of RT #1 [35628, 39405] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [120149, 124524] Rve PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 35628-36245 bp Feature: domain Description: autotrans_barl Location: 35751-36192 bp Feature: domain Description: autotrans_barl Location: 35751 -361 92 bp Feature: gene Location: 36248-36694 bp Feature: domain Description: PHA02517 Location: 36251-36692 bp Feature: domain Description: PHA0251 7 Location: 36251 -36692 bp Feature: gene Location: 36811-38334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37084-37816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37084-3781 6 bp Feature: domain Description: GIIM Note: maturase Location: 37891-38089 bp Feature: domain Description: GIIM Note: maturase Location: 37891 -38089 bp Feature: gene Location: 38288-38713 bp Feature: gene Location: 38926-39405 bp Feature: domain Description: PHA02517 Location: 38986-39340 bp Feature: domain Description: PHA0251 7 Location: 38986-39340 bp Feature: gene Location: 120149-120865 bp Feature: domain Description: Rve Location: 120164-120809 bp Feature: domain Description: Rve Location: 1 201 64-1 20809 bp Feature: gene Location: 120899-121141 bp Feature: domain Description: PRK13732 Location: 120905-121127 bp Feature: domain Description: PRK1 3732 Location: 1 20905-1 21 1 27 bp Feature: gene Location: 121336-123237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121603-122434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 603-1 22434 bp Feature: domain Description: Intron_maturas2 Location: 122548-122806 bp Feature: domain Description: Intron_maturas2 Location: 1 22548-1 22806 bp Feature: domain Description: HNHc Note: nucleases Location: 122980-123142 bp Feature: domain Description: HNHc Note: nucleases Location: 1 22980-1 231 42 bp Feature: gene Location: 123979-124182 bp Feature: gene Location: 124234-124524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RZGC01000054.1 (12151 bp)
Overview 1 RT 1: 714-4958 bp Neighborhood of RT #1 [714, 4958] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 714-1616 bp Feature: domain Description: Macro_Appr_pase Location: 732-1245 bp Feature: domain Description: Macro_Appr_pase Location: 732 -12 45 bp Feature: gene Location: 1625-2209 bp Feature: domain Description: Caudo_TAP Location: 1841-2198 bp Feature: domain Description: Caudo_TAP Location: 1841-2 198 bp Feature: gene Location: 2322-3692 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2550-3156 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 550-3156 bp Feature: gene Location: 3670-4374 bp Feature: domain Description: SLATT_5 Location: 3832-4342 bp Feature: domain Description: SLATT_5 Location: 3832 -4342 bp Feature: gene Location: 4782-4958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: RZGC01000025.1 (63945 bp)
Overview 1 RT 1: 19978-23919 bp Neighborhood of RT #1 [19978, 23919] RVT-Retrons Feature: gene Location: 19978-21117 bp Feature: gene Location: 21163-21330 bp Feature: gene Location: 21352-23124 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21511-22129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21511-22129 bp Feature: gene Location: 23345-23488 bp Feature: gene Location: 23680-23919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: RZGC01000088.1 (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RZGC01000043.1 (22704 bp)
Overview 1 RT 1: 109-3734 bp Neighborhood of RT #1 [109, 3734] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 109-351 bp Feature: domain Description: PRK13732 Location: 115-337 bp Feature: domain Description: PRK13732 Location: 115 -337 bp Feature: gene Location: 546-2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1644 bp Feature: domain Description: Intron_maturas2 Location: 1758-2016 bp Feature: domain Description: Intron_maturas2 Location: 175 8-2016 bp Feature: domain Description: HNHc Note: nucleases Location: 2190-2352 bp Feature: domain Description: HNHc Note: nucleases Location: 2190-235 2 bp Feature: gene Location: 3189-3392 bp Feature: gene Location: 3444-3734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)