myRT

myRT report for GCA_004566555.1_ASM456655v1

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Seq: CM017140.1 (144957 bp)
Overview 1 RT 1: 12942-16377 bp 2 RT 2: 27105-29780 bp 3 RT 3: 115797-119929 bp Neighborhood of RT #1 [12942, 16442] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [27105, 29788] InsE PHA02517 RVT-GII PRK10173 PRK10173 Neighborhood of RT #3 [115797, 119929] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 12942-13346 bp Feature: domain Description: InsE Location: 12972-13308 bp Feature: domain Description: InsE Location: 1 2972-1 3308 bp Feature: gene Location: 13375-13731 bp Feature: domain Description: PHA02517 Location: 13378-13687 bp Feature: domain Description: PHA0251 7 Location: 1 3378-1 3687 bp Feature: gene Location: 13848-15371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14121-14853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 21 -1 4853 bp Feature: domain Description: GIIM Note: maturase Location: 14928-15126 bp Feature: domain Description: GIIM Note: maturase Location: 1 4928-1 51 26 bp Feature: gene Location: 15325-15750 bp Feature: gene Location: 15963-16442 bp Feature: domain Description: PHA02517 Location: 16023-16377 bp Feature: domain Description: PHA0251 7 Location: 1 6023-1 6377 bp Feature: gene Location: 27105-27431 bp Feature: domain Description: InsE Location: 27108-27429 bp Feature: domain Description: InsE Location: 271 08-27429 bp Feature: gene Location: 27431-27910 bp Feature: domain Description: PHA02517 Location: 27491-27845 bp Feature: domain Description: PHA0251 7 Location: 27491 -27845 bp Feature: gene Location: 28502-29005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28775-28844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28775-28844 bp Feature: gene Location: 29044-29355 bp Feature: domain Description: PRK10173 Location: 29047-29266 bp Feature: domain Description: PRK1 01 73 Location: 29047-29266 bp Feature: gene Location: 29339-29788 bp Feature: domain Description: PRK10173 Location: 29342-29780 bp Feature: domain Description: PRK1 01 73 Location: 29342-29780 bp Feature: gene Location: 115797-116030 bp Feature: domain Description: DUF905 Location: 115827-116025 bp Feature: domain Description: DUF905 Location: 1 1 5827-1 1 6025 bp Feature: gene Location: 116093-116545 bp Feature: domain Description: PRK13732 Location: 116099-116543 bp Feature: domain Description: PRK1 3732 Location: 1 1 6099-1 1 6543 bp Feature: gene Location: 116740-118641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117007-117838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7007-1 1 7838 bp Feature: domain Description: Intron_maturas2 Location: 117952-118210 bp Feature: domain Description: Intron_maturas2 Location: 1 1 7952-1 1 821 0 bp Feature: domain Description: HNHc Note: nucleases Location: 118384-118546 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 8384-1 1 8546 bp Feature: gene Location: 119383-119586 bp Feature: gene Location: 119663-119929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RZFS01000073.1 (12750 bp)
Overview 1 RT 1: 4925-9277 bp Neighborhood of RT #1 [4925, 9282] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 4925-5143 bp Feature: gene Location: 5306-5641 bp Feature: gene Location: 6438-8339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6705-7536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6705-7536 bp Feature: domain Description: Intron_maturas2 Location: 7650-7908 bp Feature: domain Description: Intron_maturas2 Location: 7650-7908 bp Feature: domain Description: HNHc Note: nucleases Location: 8082-8244 bp Feature: domain Description: HNHc Note: nucleases Location: 8082 -82 44 bp Feature: gene Location: 8534-8986 bp Feature: domain Description: PRK13732 Location: 8540-8984 bp Feature: domain Description: PRK13732 Location: 8540-8984 bp Feature: gene Location: 9049-9282 bp Feature: domain Description: DUF905 Location: 9079-9277 bp Feature: domain Description: DUF905 Location: 9079-92 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: RZFS01000010.1 (130259 bp)
Overview 1 RT 1: 125823-130135 bp Neighborhood of RT #1 [125823, 130257] SLATT_5 RVT-UG17 Caudo_TAP Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 125823-125963 bp Feature: gene Location: 125976-126527 bp Feature: domain Description: SLATT_5 Location: 125982-126498 bp Feature: domain Description: SLATT_5 Location: 125982-126498 bp Feature: gene Location: 126505-127875 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 126733-127339 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 12673 3 -1273 3 9 bp Feature: gene Location: 127988-128572 bp Feature: domain Description: Caudo_TAP Location: 128204-128561 bp Feature: domain Description: Caudo_TAP Location: 128204-128561 bp Feature: gene Location: 128572-130257 bp Feature: domain Description: Phage_fiber_2 Location: 128620-128740 bp Feature: domain Description: Phage_fiber_2 Location: 128620-128740 bp Feature: domain Description: Phage_fiber_2 Location: 128752-128872 bp Feature: domain Description: Phage_fiber_2 Location: 128752-128872 bp Feature: domain Description: Collar Location: 129628-129766 bp Feature: domain Description: Collar Location: 129628-129766 bp Feature: domain Description: Phage_fiber Location: 129817-129856 bp Feature: domain Description: Phage_fiber Location: 129817-129856 bp Feature: domain Description: Phage_fiber Location: 129913-129952 bp Feature: domain Description: Phage_fiber Location: 129913 -129952 bp Feature: domain Description: Phage_fiber Location: 129958-129985 bp Feature: domain Description: Phage_fiber Location: 129958-129985 bp Feature: domain Description: Phage_fiber Location: 130060-130099 bp Feature: domain Description: Phage_fiber Location: 13 0060-13 0099 bp Feature: domain Description: Phage_fiber Location: 130105-130135 bp Feature: domain Description: Phage_fiber Location: 13 0105-13 013 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: RZFS01000066.1 (16615 bp)
Overview 1 RT 1: 14388-16368 bp Neighborhood of RT #1 [14388, 16613] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 14388-14792 bp Feature: domain Description: InsE Location: 14418-14754 bp Feature: domain Description: InsE Location: 14 4 18-14 754 bp Feature: gene Location: 14821-15177 bp Feature: domain Description: PHA02517 Location: 14824-15133 bp Feature: domain Description: PHA02517 Location: 14 824 -15133 bp Feature: gene Location: 15294-16613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15363-16095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15363-16095 bp Feature: domain Description: GIIM Note: maturase Location: 16170-16368 bp Feature: domain Description: GIIM Note: maturase Location: 16170-16368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: RZFS01000138.1 (1678 bp)
Overview 1 RT 1: 3-1673 bp Neighborhood of RT #1 [3, 1675] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1675 bp Feature: domain Description: InsE Location: 1442-1673 bp Feature: domain Description: InsE Location: 1442-1673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)

Seq: RZFS01000009.1 (139316 bp)
Overview 1 RT 1: 44421-48362 bp Neighborhood of RT #1 [44421, 48362] RVT-Retrons Feature: gene Location: 44421-44660 bp Feature: gene Location: 44967-45143 bp Feature: gene Location: 45216-46988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45375-45993 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45375-45993 bp Feature: gene Location: 47010-47177 bp Feature: gene Location: 47223-48362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons