myRT

myRT report for GCA_004567255.1_ASM456725v1

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Seq: RZDU01000084.1 (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RZDU01000023.1 (83353 bp)
Overview 1 RT 1: 743-4684 bp Neighborhood of RT #1 [743, 4684] RVT-Retrons Feature: gene Location: 743-1882 bp Feature: gene Location: 1928-2095 bp Feature: gene Location: 2117-3889 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2276-2894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 76-2 894 bp Feature: gene Location: 4110-4253 bp Feature: gene Location: 4445-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: RZDU01000054.1 (14958 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: RZDU01000046.1 (22705 bp)
Overview 1 RT 1: 109-3734 bp Neighborhood of RT #1 [109, 3734] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 109-351 bp Feature: domain Description: PRK13732 Location: 115-337 bp Feature: domain Description: PRK13732 Location: 115-337 bp Feature: gene Location: 546-2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-164 4 bp Feature: domain Description: Intron_maturas2 Location: 1758-2016 bp Feature: domain Description: Intron_maturas2 Location: 1758-2016 bp Feature: domain Description: HNHc Note: nucleases Location: 2190-2352 bp Feature: domain Description: HNHc Note: nucleases Location: 2190-2352 bp Feature: gene Location: 3189-3392 bp Feature: gene Location: 3444-3734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CM017205.1 (157386 bp)
Overview 1 RT 1: 42863-46575 bp 2 RT 2: 127390-131765 bp Neighborhood of RT #1 [42863, 46640] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [127390, 131765] Rve PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 42863-43480 bp Feature: domain Description: autotrans_barl Location: 42986-43427 bp Feature: domain Description: autotrans_barl Location: 42986-43427 bp Feature: gene Location: 43483-43929 bp Feature: domain Description: PHA02517 Location: 43486-43927 bp Feature: domain Description: PHA025 17 Location: 43486-43927 bp Feature: gene Location: 44046-45569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44319-45051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44319-45 05 1 bp Feature: domain Description: GIIM Note: maturase Location: 45126-45324 bp Feature: domain Description: GIIM Note: maturase Location: 45 126-45 324 bp Feature: gene Location: 45523-45948 bp Feature: gene Location: 46161-46640 bp Feature: domain Description: PHA02517 Location: 46221-46575 bp Feature: domain Description: PHA025 17 Location: 46221-465 75 bp Feature: gene Location: 127390-128106 bp Feature: domain Description: Rve Location: 127405-128050 bp Feature: domain Description: Rve Location: 127405 -12805 0 bp Feature: gene Location: 128140-128382 bp Feature: domain Description: PRK13732 Location: 128146-128368 bp Feature: domain Description: PRK13732 Location: 128146-128368 bp Feature: gene Location: 128577-130478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128844-129675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128844-129675 bp Feature: domain Description: Intron_maturas2 Location: 129789-130047 bp Feature: domain Description: Intron_maturas2 Location: 129789-130047 bp Feature: domain Description: HNHc Note: nucleases Location: 130221-130383 bp Feature: domain Description: HNHc Note: nucleases Location: 130221-130383 bp Feature: gene Location: 131220-131423 bp Feature: gene Location: 131475-131765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507)