myRT

myRT report for GCA_004568835.1_ASM456883v1

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Seq: RZBI01000003.1 (387243 bp)
Overview 1 RT 1: 256028-262274 bp Neighborhood of RT #1 [256028, 262393] SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 256028-256205 bp Feature: gene Location: 256450-257001 bp Ori: TFR69051.1 Feature: domain Description: SLATT_5 Location: 256459-256972 bp Feature: domain Description: SLATT_5 Location: 256459-256972 bp Feature: gene Location: 256979-258349 bp Ori: TFR69052.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 257207-257813 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 257207-25781 3 bp Feature: gene Location: 258462-259046 bp Ori: TFR69053.1 Feature: domain Description: Caudo_TAP Location: 258678-259035 bp Feature: domain Description: Caudo_TAP Location: 258678-259035 bp Feature: gene Location: 259046-262393 bp Ori: TFR69054.1 Feature: domain Description: phage_tail_N Location: 259049-259448 bp Feature: domain Description: phage_tail_N Location: 259049-259448 bp Feature: domain Description: 34 Location: 261146-261479 bp Feature: domain Description: 34 Location: 261 1 46-261 479 bp Feature: domain Description: Collar Location: 261764-261902 bp Feature: domain Description: Collar Location: 261 764-261 902 bp Feature: domain Description: Phage_fiber Location: 261953-261992 bp Feature: domain Description: Phage_fiber Location: 261 953-261 992 bp Feature: domain Description: Phage_fiber Location: 262049-262088 bp Feature: domain Description: Phage_fiber Location: 262049-262088 bp Feature: domain Description: Phage_fiber Location: 262196-262235 bp Feature: domain Description: Phage_fiber Location: 2621 96-262235 bp Feature: domain Description: Phage_fiber Location: 262241-262274 bp Feature: domain Description: Phage_fiber Location: 262241 -262274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: RZBI01000074.1 (1329 bp)
Overview 1 RT 1: 1-1329 bp Neighborhood of RT #1 [1, 1329] RVT-GII Feature: gene Location: 1-314 bp Ori: TFR59857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59-313 bp Feature: gene Location: 623-994 bp Feature: gene Location: 987-1329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RZBI01000004.1 (385363 bp)
Overview 1 RT 1: 378241-381972 bp Neighborhood of RT #1 [378241, 381972] fecC RVT-GII COG3547 Feature: gene Location: 378241-378354 bp Gene: fecC Feature: domain Description: fecC Location: 378247-378334 bp Feature: domain Description: fecC Location: 3 78247-3 783 3 4 bp Feature: gene Location: 378842-379074 bp Feature: gene Location: 379145-380479 bp Ori: TFR68541.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379430-380117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7943 0-3 80117 bp Feature: gene Location: 380718-381720 bp Feature: domain Description: COG3547 Location: 380736-381027 bp Feature: domain Description: COG3 547 Location: 3 8073 6-3 81027 bp Feature: gene Location: 381818-381972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecC (PRK11228), RVT-GII, COG3547 (Transposase )

Seq: RZBI01000040.1 (11212 bp)
Overview 1 RT 1: 3322-5644 bp 2 RT 2: 8224-11212 bp Neighborhood of RT #1 [3322, 5644] DDE_Tnp_IS66_C RVT-GII group_II_RT_mat Neighborhood of RT #2 [8224, 11212] PHA02517 RVT-GII GIIM Feature: gene Location: 3322-3701 bp Feature: gene Location: 3737-3916 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3782-3893 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3782-3893 bp Feature: gene Location: 4000-5125 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4096-4621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 096-4 621 bp Feature: gene Location: 5106-5230 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5139-5226 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5139-5226 bp Feature: gene Location: 5225-5644 bp Feature: gene Location: 8224-8394 bp Feature: gene Location: 8542-8721 bp Feature: domain Description: PHA02517 Location: 8545-8722 bp Feature: domain Description: PHA02517 Location: 854 5-8722 bp Feature: gene Location: 8699-10309 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8957-9689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8957-9689 bp Feature: domain Description: GIIM Note: maturase Location: 9809-9986 bp Feature: domain Description: GIIM Note: maturase Location: 9809-9986 bp Feature: gene Location: 10594-10960 bp Feature: gene Location: 10962-11212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, group_II_RT_mat (TIGR04416), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: RZBI01000023.1 (35468 bp)
Overview 1 RT 1: 16073-20188 bp Neighborhood of RT #1 [16073, 20188] RVT-GII GIIM InsG Feature: gene Location: 16073-16278 bp Feature: gene Location: 16348-16621 bp Feature: gene Location: 16846-18234 bp Ori: TFR62713.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17176-17794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17176-17794 bp Feature: domain Description: GIIM Note: maturase Location: 17842-18073 bp Feature: domain Description: GIIM Note: maturase Location: 17842-18073 bp Feature: gene Location: 18621-19541 bp Feature: domain Description: InsG Location: 18624-19539 bp Feature: domain Description: InsG Location: 18624-195 39 bp Feature: gene Location: 20009-20188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385)