myRT

myRT report for GCA_004571045.1_ASM457104v1

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Seq: SPQU01000069.1 (9374 bp)
Overview 1 RT 1: 3-7150 bp Neighborhood of RT #1 [3, 7389] DDE_Tnp_1_6 PRK00215 RVT-GII RVT-GII GIIM COG3547 RVT-GII GIIM COG5659 COG5659 Feature: gene Location: 3-275 bp Feature: domain Description: DDE_Tnp_1_6 Location: 27-183 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 27-1 83 bp Feature: gene Location: 720-1001 bp Feature: domain Description: PRK00215 Location: 747-942 bp Feature: domain Description: PRK0021 5 Location: 747-942 bp Feature: gene Location: 1040-1837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 454-1 832 bp Feature: gene Location: 2087-2218 bp Feature: gene Location: 2900-3823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2906-3362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2906-3362 bp Feature: domain Description: GIIM Note: maturase Location: 3443-3665 bp Feature: domain Description: GIIM Note: maturase Location: 3443-3665 bp Feature: gene Location: 3795-4826 bp Feature: domain Description: COG3547 Location: 3813-4782 bp Feature: domain Description: COG3547 Location: 381 3-4782 bp Feature: gene Location: 4983-5771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5211-5379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 1 -5379 bp Feature: domain Description: GIIM Note: maturase Location: 5463-5679 bp Feature: domain Description: GIIM Note: maturase Location: 5463-5679 bp Feature: gene Location: 5912-6556 bp Feature: domain Description: COG5659 Location: 5957-6458 bp Feature: domain Description: COG5659 Location: 5957-6458 bp Feature: gene Location: 6556-7389 bp Feature: domain Description: COG5659 Location: 6562-7150 bp Feature: domain Description: COG5659 Location: 6562-71 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), PRK00215 (transcriptional repressor LexA), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG5659 (SRSO17 transposase )

Seq: SPQU01000092.1 (3631 bp)
Overview 1 RT 1: 1-3201 bp Neighborhood of RT #1 [1, 3629] COG3547 RVT-GII GIIM RHH_1 Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 1-315 bp Feature: domain Description: COG3547 Location: 4-274 bp Feature: domain Description: COG3547 Location: 4-2 74 bp Feature: gene Location: 388-678 bp Feature: gene Location: 836-1957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1295-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 95-1574 bp Feature: domain Description: GIIM Note: maturase Location: 1655-1880 bp Feature: domain Description: GIIM Note: maturase Location: 1655-1880 bp Feature: gene Location: 1603-1932 bp Feature: domain Description: RHH_1 Location: 1804-1912 bp Feature: domain Description: RHH_1 Location: 1804-1912 bp Feature: gene Location: 2073-3629 bp Feature: domain Description: Resolvase Location: 2085-2526 bp Feature: domain Description: Resolvase Location: 2 085-2 52 6 bp Feature: domain Description: Recombinase Location: 2613-2973 bp Feature: domain Description: Recombinase Location: 2 613-2 973 bp Feature: domain Description: Zn_ribbon_recom Location: 3015-3201 bp Feature: domain Description: Zn_ribbon_recom Location: 3015-32 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RHH_1 (pfam01402), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: SPQU01000054.1 (15074 bp)
Overview 1 RT 1: 1824-6115 bp Neighborhood of RT #1 [1824, 6115] PRK13977 DUF4096 RVT-GII GIIM Feature: gene Location: 1824-3233 bp Feature: domain Description: PRK13977 Location: 1830-2739 bp Feature: domain Description: PRK13 977 Location: 183 0-273 9 bp Feature: gene Location: 3296-3550 bp Feature: domain Description: DUF4096 Location: 3329-3542 bp Feature: domain Description: DUF4096 Location: 3 3 29-3 542 bp Feature: gene Location: 3894-4949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3903-4521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 903 -4521 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4785 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4785 bp Feature: gene Location: 5000-5227 bp Feature: gene Location: 5537-6115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13977 (myosin-cross-reactive antigen; Provisional), DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388)