myRT

myRT report for GCA_004684955.1_ASM468495v1

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Seq: SRIN01000048.1 (37701 bp)
Overview 1 RT 1: 22748-30064 bp Neighborhood of RT #1 [22748, 30064] PRK09692 RVT-UG16 PriCT_2 COG4643 DUF927 Feature: gene Location: 22748-22993 bp Feature: gene Location: 22965-24182 bp Ori: TGB33159.1 Feature: domain Description: PRK09692 Location: 22971-24156 bp Feature: domain Description: PRK09692 Location: 22971 -241 56 bp Feature: gene Location: 24450-25946 bp Ori: TGB33160.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 24813-25221 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 2481 3-25221 bp Feature: gene Location: 26749-29625 bp Ori: TGB33161.1 Feature: domain Description: PriCT_2 Location: 26788-26995 bp Feature: domain Description: PriCT_2 Location: 26788-26995 bp Feature: domain Description: COG4643 Location: 27064-27736 bp Feature: domain Description: COG4643 Location: 27064-27736 bp Feature: domain Description: DUF927 Location: 27865-28696 bp Feature: domain Description: DUF927 Location: 27865-28696 bp Feature: gene Location: 29738-30064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG16, PriCT_2 (pfam08707), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), DUF927 (pfam06048)

Seq: SRIN01000008.1 (74536 bp)
Overview 1 RT 1: 11967-17711 bp Neighborhood of RT #1 [11967, 17728] AlpA RVT-Retrons AAA_21 AAA_21 PinE Feature: gene Location: 11967-12158 bp Ori: TGB35100.1 Feature: domain Description: AlpA Location: 11979-12147 bp Feature: domain Description: AlpA Location: 11979-12 147 bp Feature: gene Location: 12819-13559 bp Feature: gene Location: 14444-15412 bp Ori: TGB35102.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14573-15131 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14573-15131 bp Feature: gene Location: 15409-16752 bp Ori: TGB35103.1 Feature: domain Description: AAA_21 Location: 15490-15640 bp Feature: domain Description: AAA_2 1 Location: 15490-15640 bp Feature: domain Description: AAA_21 Location: 15982-16153 bp Feature: domain Description: AAA_2 1 Location: 15982 -16153 bp Feature: gene Location: 17153-17728 bp Ori: TGB35104.1 Feature: domain Description: PinE Location: 17162-17711 bp Feature: domain Description: PinE Location: 17162 -17711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-Retrons, AAA_21 (pfam13304), PinE (COG1961)