myRT

myRT report for GCA_004745115.1_ASM474511v1

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Seq: PDHZ01000026.1 (724477 bp)
Overview 1 RT 1: 611763-617988 bp Neighborhood of RT #1 [611763, 618134] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 611763-612017 bp Feature: domain Description: Phage_integrase Location: 611829-611925 bp Feature: domain Description: Phage_integrase Location: 61 1 829-61 1 925 bp Feature: gene Location: 612100-612570 bp Feature: gene Location: 612911-616120 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 613439-613925 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 61 3439-61 3925 bp Feature: domain Description: nitrilase Location: 615434-616031 bp Feature: domain Description: nitrilase Location: 61 5434-61 6031 bp Feature: gene Location: 616415-617218 bp Feature: domain Description: AbiEi_3_N Location: 616448-616709 bp Feature: domain Description: AbiEi_3_N Location: 61 6448-61 6709 bp Feature: domain Description: AbiEi_3 Location: 616721-617177 bp Feature: domain Description: AbiEi_3 Location: 61 6721 -61 71 77 bp Feature: gene Location: 617205-618134 bp Feature: domain Description: AbiEii Location: 617247-617988 bp Feature: domain Description: AbiEii Location: 61 7247-61 7988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PDHZ01000011.1 (255646 bp)
Overview 1 RT 1: 143659-146588 bp Neighborhood of RT #1 [143659, 146593] dut slmA RVT-Retrons pyrE Feature: gene Location: 143659-144117 bp Feature: domain Description: dut Location: 143665-144112 bp Feature: domain Description: dut Location: 143665-144112 bp Feature: gene Location: 144224-144820 bp Feature: domain Description: slmA Location: 144230-144806 bp Feature: domain Description: slmA Location: 1442 30-144806 bp Feature: gene Location: 144866-145825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145004-145550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145004-145550 bp Feature: gene Location: 145712-145990 bp Feature: gene Location: 146123-146593 bp Feature: domain Description: pyrE Location: 146129-146588 bp Feature: domain Description: pyrE Location: 14612 9-146588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: PDHZ01000008.1 (71311 bp)
Overview 1 RT 1: 5300-12587 bp Neighborhood of RT #1 [5300, 12587] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PinE RVT-UG4 Feature: gene Location: 5300-5647 bp Feature: domain Description: TnpB_IS66 Location: 5327-5618 bp Feature: domain Description: TnpB_IS66 Location: 53 27-5618 bp Feature: gene Location: 5667-7106 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5805-6027 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5805-6027 bp Feature: domain Description: zf-IS66 Location: 6051-6183 bp Feature: domain Description: zf-IS66 Location: 6051-6183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6228-7065 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6228-7065 bp Feature: gene Location: 7568-8800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7769-8423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7769-8423 bp Feature: domain Description: GIIM Note: maturase Location: 8501-8723 bp Feature: domain Description: GIIM Note: maturase Location: 8501-8723 bp Feature: gene Location: 8916-9062 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8928-9039 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8928-903 9 bp Feature: gene Location: 9162-9584 bp Feature: domain Description: PinE Location: 9192-9567 bp Feature: domain Description: PinE Location: 9192-9567 bp Feature: gene Location: 10111-10929 bp Feature: gene Location: 10926-11936 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11277-11721 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11277-11721 bp Feature: gene Location: 12000-12179 bp Feature: gene Location: 12375-12587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PinE (COG1961), RVT-UG4

Seq: PDHZ01000053.1 (21150 bp)
Overview 1 RT 1: 11422-14265 bp Neighborhood of RT #1 [11422, 14324] RVT-UG4 StbD Feature: gene Location: 11422-12084 bp Feature: gene Location: 12204-12347 bp Feature: gene Location: 12344-13354 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12695-13139 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12695-13139 bp Feature: gene Location: 13699-13866 bp Feature: gene Location: 14073-14324 bp Feature: domain Description: StbD Location: 14085-14265 bp Feature: domain Description: StbD Location: 14 085-14 265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, StbD (COG2161)