myRT

myRT report for GCA_004745145.1_ASM474514v1

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Seq: PDID01000026.1 (192306 bp)
Overview 1 RT 1: 27548-31426 bp Neighborhood of RT #1 [27548, 31431] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27548-28264 bp Ori: TGB85197.1 Feature: domain Description: rph Location: 27551-28259 bp Feature: domain Description: rph Location: 27551 -28259 bp Feature: gene Location: 28330-28971 bp Ori: TGB85198.1 Feature: domain Description: pyrE Location: 28333-28966 bp Feature: domain Description: pyrE Location: 28333-28966 bp Feature: gene Location: 29269-30228 bp Ori: TGB85199.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29407-29953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29407-29953 bp Feature: gene Location: 30274-30869 bp Feature: domain Description: slmA Location: 30280-30367 bp Feature: domain Description: slmA Location: 30280-30367 bp Feature: gene Location: 30976-31431 bp Ori: TGB85326.1 Feature: domain Description: dut Location: 30979-31426 bp Feature: domain Description: dut Location: 30979-31 426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PDID01000007.1 (8648 bp)
Overview 1 RT 1: 2862-6584 bp Neighborhood of RT #1 [2862, 6584] PRK10167 YhhI YhhI RVT-GII GIIM Feature: gene Location: 2862-3371 bp Ori: TGB87839.1 Feature: domain Description: PRK10167 Location: 2865-3369 bp Feature: domain Description: PRK10167 Location: 2 865-3369 bp Feature: gene Location: 3522-4263 bp Feature: domain Description: YhhI Location: 3525-3870 bp Feature: domain Description: YhhI Location: 352 5-3870 bp Feature: domain Description: YhhI Location: 3927-4209 bp Feature: domain Description: YhhI Location: 392 7-42 09 bp Feature: gene Location: 4489-5811 bp Ori: TGB87840.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4765-5422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4765-542 2 bp Feature: domain Description: GIIM Note: maturase Location: 5506-5716 bp Feature: domain Description: GIIM Note: maturase Location: 5506-5716 bp Feature: gene Location: 6253-6312 bp Feature: gene Location: 6346-6584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10167 (hypothetical protein; Provisional), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: PDID01000055.1 (28978 bp)
Overview 1 RT 1: 1-2741 bp Neighborhood of RT #1 [1, 3452] IS285 RVT-GII GIIM InsQ Feature: gene Location: 1-530 bp Ori: TGB81581.1 Feature: domain Description: IS285 Location: 31-523 bp Feature: domain Description: IS285 Location: 3 1-523 bp Feature: gene Location: 603-1826 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 9-1551 bp Feature: domain Description: GIIM Note: maturase Location: 1611-1809 bp Feature: domain Description: GIIM Note: maturase Location: 1611-1809 bp Feature: gene Location: 1875-2202 bp Feature: gene Location: 2243-3452 bp Feature: domain Description: InsQ Location: 2258-2741 bp Feature: domain Description: InsQ Location: 2258-2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: PDID01000012.1 (35044 bp)
Overview 1 RT 1: 29854-34932 bp Neighborhood of RT #1 [29854, 35044] YdfG LysR RVT-UG17 IS285 Feature: gene Location: 29854-30576 bp Ori: TGB87236.1 Feature: domain Description: YdfG Location: 29860-30568 bp Feature: domain Description: YdfG Location: 29860-30568 bp Feature: gene Location: 30675-31573 bp Feature: domain Description: LysR Location: 30684-31176 bp Feature: domain Description: LysR Location: 30684 -31176 bp Feature: gene Location: 31937-33274 bp Ori: TGB87239.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 32165-32768 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 32165-32768 bp Feature: gene Location: 34458-35044 bp Feature: domain Description: IS285 Location: 34461-34932 bp Feature: domain Description: IS285 Location: 34 4 61-34 932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdfG (COG4221), LysR (COG0583), RVT-UG17, IS285 (COG3328)