myRT

myRT report for GCA_004762035.1_ASM476203v1

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Seq: SIJK01000035.1 Candidatus Chloroploca sp. M-50 NODE_126_length_55994_cov_66.913924, whole genome shotgun sequence (55994 bp)
Overview 1 RT 1: 11859-17310 bp Neighborhood of RT #1 [11859, 17310] COG5635 YfmG RVT-DGRs Avd_like Feature: gene Location: 11859-15314 bp Feature: domain Description: COG5635 Location: 12651-13998 bp Feature: domain Description: COG5635 Location: 1 2651 -1 3998 bp Feature: domain Description: YfmG Location: 14448-15285 bp Feature: domain Description: YfmG Location: 1 4448-1 5285 bp Feature: gene Location: 15315-15638 bp Feature: gene Location: 15834-16604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15912-16386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 591 2-1 6386 bp Feature: gene Location: 16601-16972 bp Feature: domain Description: Avd_like Location: 16631-16937 bp Feature: domain Description: Avd_like Location: 1 6631 -1 6937 bp Feature: gene Location: 17002-17310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: SIJK01000060.1 Candidatus Chloroploca sp. M-50 NODE_216_length_32234_cov_75.280960, whole genome shotgun sequence (32234 bp)
Overview 1 RT 1: 419-8369 bp Neighborhood of RT #1 [419, 8380] PIN_VapC4-5_FitB-like COG5635 YfmG RVT-DGRs COG5635 YfmG Feature: gene Location: 419-805 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 446-797 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 446-797 bp Feature: gene Location: 881-3760 bp Feature: domain Description: COG5635 Location: 1439-2630 bp Feature: domain Description: COG5635 Location: 1439-2 630 bp Feature: domain Description: YfmG Location: 2915-3749 bp Feature: domain Description: YfmG Location: 2 915-3749 bp Feature: gene Location: 3916-4524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4126-4429 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 412 6-442 9 bp Feature: gene Location: 4881-5234 bp Feature: gene Location: 5285-8380 bp Feature: domain Description: COG5635 Location: 6041-6800 bp Feature: domain Description: COG5635 Location: 6041-6800 bp Feature: domain Description: YfmG Location: 7529-8369 bp Feature: domain Description: YfmG Location: 752 9-8369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), RVT-DGRs

Seq: SIJK01000070.1 Candidatus Chloroploca sp. M-50 NODE_244_length_26562_cov_59.243483, whole genome shotgun sequence (26562 bp)
Overview 1 RT 1: 14304-17937 bp Neighborhood of RT #1 [14304, 17975] RNase_HI_like RVT-CRISPR RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 14304-14840 bp Feature: gene Location: 14828-15274 bp Feature: domain Description: RNase_HI_like Location: 14855-15236 bp Feature: domain Description: RNase_HI_like Location: 14855-1523 6 bp Feature: gene Location: 15282-16694 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15531-15864 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1553 1-15864 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 16230-16500 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1623 0-16500 bp Feature: gene Location: 16698-17690 bp Feature: domain Description: Cas1_I-II-III Location: 16707-17655 bp Feature: domain Description: Cas1_I-II-III Location: 16707-17655 bp Feature: gene Location: 17700-17975 bp Feature: domain Description: Cas2_I_II_III Location: 17712-17937 bp Feature: domain Description: Cas2_I_II_III Location: 17712-1793 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: SIJK01000075.1 Candidatus Chloroploca sp. M-50 NODE_282_length_20048_cov_79.550093, whole genome shotgun sequence (20048 bp)
Overview 1 RT 1: 7973-14059 bp Neighborhood of RT #1 [7973, 14082] PhdYeFM_antitox COG5635 pfam03781 RVT-DGRs Avd_like UPF0175 Feature: gene Location: 7973-8212 bp Feature: domain Description: PhdYeFM_antitox Location: 8027-8159 bp Feature: domain Description: PhdYeFM_antitox Location: 8027-8159 bp Feature: gene Location: 8433-11633 bp Feature: domain Description: COG5635 Location: 9210-10452 bp Feature: domain Description: COG5635 Location: 9210-104 52 bp Feature: domain Description: pfam03781 Location: 10854-11592 bp Feature: domain Description: pfam03781 Location: 10854 -11592 bp Feature: gene Location: 11811-12887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12024-12669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12024 -12669 bp Feature: gene Location: 12880-13254 bp Feature: domain Description: Avd_like Location: 12901-13204 bp Feature: domain Description: Avd_like Location: 12901-13204 bp Feature: gene Location: 13789-14082 bp Feature: domain Description: UPF0175 Location: 13876-14059 bp Feature: domain Description: UPF0175 Location: 13876-14 059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376), UPF0175 (pfam03683)

Seq: SIJK01000017.1 Candidatus Chloroploca sp. M-50 NODE_64_length_111874_cov_65.878652, whole genome shotgun sequence (111874 bp)
Overview 1 RT 1: 58577-62966 bp Neighborhood of RT #1 [58577, 62966] HEPN RVT_N RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 58577-59080 bp Feature: domain Description: HEPN Location: 58655-59054 bp Feature: domain Description: HEPN Location: 5 865 5 -5 905 4 bp Feature: gene Location: 59166-59663 bp Feature: gene Location: 59764-61473 bp Feature: domain Description: RVT_N Location: 59788-59992 bp Feature: domain Description: RVT_N Location: 5 9788-5 9992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60064-60751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60064-6075 1 bp Feature: domain Description: GIIM Note: maturase Location: 60823-61051 bp Feature: domain Description: GIIM Note: maturase Location: 60823-6105 1 bp Feature: domain Description: HNHc Note: nucleases Location: 61267-61420 bp Feature: domain Description: HNHc Note: nucleases Location: 61267-61420 bp Feature: gene Location: 62049-62702 bp Feature: domain Description: PRK00024 Location: 62310-62679 bp Feature: domain Description: PRK00024 Location: 62310-62679 bp Feature: gene Location: 62778-62966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN (smart00748), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: SIJK01000108.1 Candidatus Chloroploca sp. M-50 NODE_675_length_8069_cov_62.801972, whole genome shotgun sequence (8069 bp)
Overview 1 RT 1: 1968-8059 bp Neighborhood of RT #1 [1968, 8067] COG2405 RVT_N RVT-GII GIIM HNHc RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 1968-2501 bp Feature: domain Description: COG2405 Location: 1977-2454 bp Feature: domain Description: COG2405 Location: 1977-2454 bp Feature: gene Location: 2653-2799 bp Feature: gene Location: 2900-4606 bp Feature: domain Description: RVT_N Location: 2924-3119 bp Feature: domain Description: RVT_N Location: 2924-3119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3200-3887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3200-3887 bp Feature: domain Description: GIIM Note: maturase Location: 3959-4175 bp Feature: domain Description: GIIM Note: maturase Location: 3959-4175 bp Feature: domain Description: HNHc Note: nucleases Location: 4403-4553 bp Feature: domain Description: HNHc Note: nucleases Location: 4403-4553 bp Feature: gene Location: 4966-5295 bp Feature: gene Location: 5393-7102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5675-6356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 75-6 356 bp Feature: domain Description: GIIM Note: maturase Location: 6425-6629 bp Feature: domain Description: GIIM Note: maturase Location: 6 425-6 6 29 bp Feature: domain Description: HNHc Note: nucleases Location: 6938-7064 bp Feature: domain Description: HNHc Note: nucleases Location: 6 938-706 4 bp Feature: gene Location: 7693-8067 bp Feature: domain Description: PRK00024 Location: 7810-8059 bp Feature: domain Description: PRK00024 Location: 7810-8059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: SIJK01000002.1 Candidatus Chloroploca sp. M-50 NODE_9_length_230914_cov_54.089986, whole genome shotgun sequence (230914 bp)
Overview 1 RT 1: 201494-206083 bp Neighborhood of RT #1 [201494, 206100] AAA_21 RVT_N RVT-GII GIIM HNHc sialate_O-acetylesterase_like2 Feature: gene Location: 201494-202765 bp Feature: domain Description: AAA_21 Location: 201563-202550 bp Feature: domain Description: AAA_21 Location: 201563-202550 bp Feature: gene Location: 202785-202970 bp Feature: gene Location: 203162-204829 bp Feature: domain Description: RVT_N Location: 203210-203447 bp Feature: domain Description: RVT_N Location: 203210-203447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203504-204164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203504-204164 bp Feature: domain Description: GIIM Note: maturase Location: 204218-204449 bp Feature: domain Description: GIIM Note: maturase Location: 204218-204449 bp Feature: domain Description: HNHc Note: nucleases Location: 204632-204797 bp Feature: domain Description: HNHc Note: nucleases Location: 204632-2047 97 bp Feature: gene Location: 203624-205201 bp Feature: gene Location: 205537-206100 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 205582-206083 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 205582-206083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), sialate_O-acetylesterase_like2 (cd01828)