myRT

myRT report for GCA_004766045.1_ASM476604v1

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Seq: SPQQ01000008.1 (255296 bp)
Overview 1 RT 1: 83459-87824 bp Neighborhood of RT #1 [83459, 87824] RVT-GII H2O2_YaaD Feature: gene Location: 83459-83911 bp Feature: gene Location: 84138-84473 bp Feature: gene Location: 85037-85879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85067-85529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85067-85529 bp Feature: gene Location: 86046-86795 bp Feature: domain Description: H2O2_YaaD Location: 86049-86751 bp Feature: domain Description: H2O2_YaaD Location: 86049-86751 bp Feature: gene Location: 87204-87824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, H2O2_YaaD (pfam03883)

Seq: SPQQ01000009.1 (217161 bp)
Overview 1 RT 1: 26-1073 bp Neighborhood of RT #1 [26, 1073] RVT-GII Feature: gene Location: 26-604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332-566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 -566 bp Feature: gene Location: 662-889 bp Feature: gene Location: 906-1073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SPQQ01000029.1 (25384 bp)
Overview 1 RT 1: 57-4516 bp Neighborhood of RT #1 [57, 4548] RVT-GII HNHc RVT-GII matK HNHc YgiN HTH_ARSR Feature: gene Location: 57-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-564 bp Feature: gene Location: 885-1364 bp Feature: domain Description: HNHc Note: nucleases Location: 1092-1227 bp Feature: domain Description: HNHc Note: nucleases Location: 1092-1227 bp Feature: gene Location: 1996-3810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260-3061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260-3 061 bp Feature: domain Description: matK Location: 3178-3397 bp Feature: domain Description: matK Location: 3 178-3 3 97 bp Feature: domain Description: HNHc Note: nucleases Location: 3595-3751 bp Feature: domain Description: HNHc Note: nucleases Location: 3 595-3 751 bp Feature: gene Location: 3800-4156 bp Feature: domain Description: YgiN Location: 4025-4151 bp Feature: domain Description: YgiN Location: 4025-4151 bp Feature: gene Location: 4252-4548 bp Feature: domain Description: HTH_ARSR Location: 4360-4516 bp Feature: domain Description: HTH_ARSR Location: 43 60-4516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), matK (CHL00002), YgiN (COG1359), HTH_ARSR (smart00418)

Seq: SPQQ01000031.1 (17721 bp)
Overview 1 RT 1: 10015-14773 bp Neighborhood of RT #1 [10015, 14784] xerC XerD XerD RVT-GII GIIM PrdX_deacylase Feature: gene Location: 10015-10977 bp Feature: domain Description: xerC Location: 10024-10897 bp Feature: domain Description: xerC Location: 10024 -10897 bp Feature: gene Location: 10967-12889 bp Feature: domain Description: XerD Location: 10973-11858 bp Feature: domain Description: XerD Location: 10973-11858 bp Feature: domain Description: XerD Location: 11990-12833 bp Feature: domain Description: XerD Location: 11990-12833 bp Feature: gene Location: 12953-13795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12980-13427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12980-134 27 bp Feature: domain Description: GIIM Note: maturase Location: 13517-13697 bp Feature: domain Description: GIIM Note: maturase Location: 13517-13697 bp Feature: gene Location: 13991-14191 bp Feature: gene Location: 14293-14784 bp Feature: domain Description: PrdX_deacylase Location: 14311-14773 bp Feature: domain Description: PrdX_deacylase Location: 14 311-14 773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), XerD (COG4974), RVT-GII, GIIM (pfam08388), PrdX_deacylase (cd04335)

Seq: SPQQ01000012.1 (124486 bp)
Overview 1 RT 1: 122612-124419 bp Neighborhood of RT #1 [122612, 124457] DUF3231 RVT-GII Feature: gene Location: 122612-122809 bp Feature: domain Description: DUF3231 Location: 122621-122789 bp Feature: domain Description: DUF3231 Location: 122621-122789 bp Feature: gene Location: 123567-123749 bp Feature: gene Location: 123876-124457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124185-124419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124185 -124419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3231 (pfam11553), RVT-GII

Seq: SPQQ01000001.1 (861625 bp)
Overview 1 RT 1: 58-1006 bp Neighborhood of RT #1 [58, 1006] RVT-GII GIIM Feature: gene Location: 58-204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-199 bp Feature: gene Location: 236-580 bp Feature: domain Description: GIIM Note: maturase Location: 257-398 bp Feature: domain Description: GIIM Note: maturase Location: 257-398 bp Feature: gene Location: 674-1006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)