myRT

myRT report for GCA_004766535.1_ASM476653v1

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Seq: QERI01000039.1 (15742 bp)
Overview 1 RT 1: 9795-14693 bp Neighborhood of RT #1 [9795, 14758] CccA COG3293 COG3293 RVT-GII GIIM AccC Feature: gene Location: 9795-10196 bp Ori: TGE88126.1 Feature: domain Description: CccA Location: 9903-10194 bp Feature: domain Description: CccA Location: 9903-1 01 94 bp Feature: gene Location: 10266-11069 bp Feature: domain Description: COG3293 Location: 10323-10647 bp Feature: domain Description: COG3293 Location: 1 0323-1 0647 bp Feature: domain Description: COG3293 Location: 10914-11061 bp Feature: domain Description: COG3293 Location: 1 091 4-1 1 061 bp Feature: gene Location: 11701-12951 bp Ori: TGE88127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11917-12562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 91 7-1 2562 bp Feature: domain Description: GIIM Note: maturase Location: 12649-12859 bp Feature: domain Description: GIIM Note: maturase Location: 1 2649-1 2859 bp Feature: gene Location: 13003-13236 bp Feature: gene Location: 13469-14758 bp Ori: TGE88129.1 Feature: domain Description: AccC Location: 13487-14693 bp Feature: domain Description: AccC Location: 1 3487-1 4693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CccA (COG2010), COG3293 (Transposase ), RVT-GII, GIIM (pfam08388), AccC (COG0439)

Seq: QERI01000058.1 (1571 bp)
Overview 1 RT 1: 4-1567 bp Neighborhood of RT #1 [4, 1571] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 4-1332 bp Ori: TGE86649.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 98-955 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 102 4-12 37 bp Feature: gene Location: 1444-1571 bp Feature: domain Description: DDE_Tnp_1 Location: 1450-1567 bp Feature: domain Description: DDE_Tnp_1 Location: 1450-1567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: QERI01000032.1 (31907 bp)
Overview 1 RT 1: 7316-11457 bp Neighborhood of RT #1 [7316, 11492] HTH_29 rve RVT-UG17 SLATT_5 DUF4263 Feature: gene Location: 7316-8737 bp Ori: TGE88983.1 Feature: domain Description: HTH_29 Location: 7358-7541 bp Feature: domain Description: HTH_29 Location: 73 58-7541 bp Feature: domain Description: rve Location: 7742-8108 bp Feature: domain Description: rve Location: 7742-8108 bp Feature: gene Location: 8670-8921 bp Feature: gene Location: 8955-10271 bp Ori: TGE88985.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9183-9765 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9183 -9765 bp Feature: gene Location: 10277-10855 bp Ori: TGE88986.1 Feature: domain Description: SLATT_5 Location: 10304-10838 bp Feature: domain Description: SLATT_5 Location: 103 04-1083 8 bp Feature: gene Location: 11148-11492 bp Ori: TGE88987.1 Feature: domain Description: DUF4263 Location: 11163-11457 bp Feature: domain Description: DUF4263 Location: 11163 -11457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), RVT-UG17, SLATT_5 (pfam18160), DUF4263 (pfam14082)

Seq: QERI01000024.1 (68603 bp)
Overview 1 RT 1: 54590-57480 bp Neighborhood of RT #1 [54590, 57482] HU_IHF RVT_N RVT-GII GIIM HU_IHF COG5489 Feature: gene Location: 54590-54760 bp Ori: TGE91311.1 Feature: domain Description: HU_IHF Location: 54605-54758 bp Feature: domain Description: HU_IHF Location: 54 605-54 758 bp Feature: gene Location: 54791-55075 bp Feature: gene Location: 55368-56888 bp Ori: TGE91312.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55419-55647 bp Feature: domain Description: RVT_N Location: 554 19-5564 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55707-56346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55707-5634 6 bp Feature: domain Description: GIIM Note: maturase Location: 56403-56631 bp Feature: domain Description: GIIM Note: maturase Location: 564 03-56631 bp Feature: gene Location: 56982-57101 bp Feature: domain Description: HU_IHF Location: 56988-57087 bp Feature: domain Description: HU_IHF Location: 56988-57087 bp Feature: gene Location: 57174-57482 bp Ori: TGE91313.1 Feature: domain Description: COG5489 Location: 57177-57480 bp Feature: domain Description: COG54 89 Location: 57177-574 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )