myRT

myRT report for GCA_004767625.1_ASM476762v1

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Seq: SRND01000054.1 (8937 bp)
Overview 1 RT 1: 3-2040 bp Neighborhood of RT #1 [3, 2042] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HNHc COG4453 Feature: gene Location: 3-383 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 249-360 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 249-360 bp Feature: gene Location: 532-1311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-628 bp Feature: domain Description: GIIM Note: maturase Location: 682-913 bp Feature: domain Description: GIIM Note: maturase Location: 682-91 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1126-1288 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 26-1 288 bp Feature: gene Location: 1570-1704 bp Feature: gene Location: 1752-2042 bp Feature: domain Description: COG4453 Location: 1788-2040 bp Feature: domain Description: COG4453 Location: 1 788-2040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4453 (Uncharacterized conserved protein, DUF1778 family )

Seq: SRND01000033.1 (49546 bp)
Overview 1 RT 1: 143-2348 bp Neighborhood of RT #1 [143, 2383] HTH_23 InsE RVT_N RVT-GII HOK_GEF Feature: gene Location: 143-820 bp Feature: domain Description: HTH_23 Location: 203-314 bp Feature: domain Description: HTH_2 3 Location: 2 03-314 bp Feature: domain Description: InsE Location: 446-797 bp Feature: domain Description: InsE Location: 446-797 bp Feature: gene Location: 857-1648 bp Feature: domain Description: RVT_N Location: 908-1151 bp Feature: domain Description: RVT_N Location: 908-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196-1631 bp Feature: gene Location: 1651-2028 bp Feature: gene Location: 2213-2383 bp Feature: domain Description: HOK_GEF Location: 2225-2348 bp Feature: domain Description: HOK_GEF Location: 2 2 2 5-2 348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT_N (pfam13655), RVT-GII, HOK_GEF (pfam01848)

Seq: SRND01000019.1 (104086 bp)
Overview 1 RT 1: 5208-9367 bp Neighborhood of RT #1 [5208, 9453] PRK11415 RVT-GII GIIM N6_Mtase Feature: gene Location: 5208-5435 bp Feature: domain Description: PRK11415 Location: 5211-5412 bp Feature: domain Description: PRK11415 Location: 5211-5412 bp Feature: gene Location: 6528-6671 bp Feature: gene Location: 6950-8302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7271-7889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7271-7889 bp Feature: domain Description: GIIM Note: maturase Location: 7937-8168 bp Feature: domain Description: GIIM Note: maturase Location: 793 7-8168 bp Feature: gene Location: 8373-8753 bp Feature: gene Location: 8767-9453 bp Feature: domain Description: N6_Mtase Location: 9064-9367 bp Feature: domain Description: N6_Mtase Location: 9064-93 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11415 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384)

Seq: SRND01000034.1 (44363 bp)
Overview 1 RT 1: 3-1585 bp 2 RT 2: 5508-9586 bp Neighborhood of RT #1 [3, 1585] DDE_Tnp_IS66 RVT-GII Neighborhood of RT #2 [5508, 9586] PRK15211 RVT-UG4 Feature: gene Location: 3-251 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-210 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-210 bp Feature: gene Location: 459-620 bp Feature: gene Location: 720-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-972 bp Feature: gene Location: 1202-1342 bp Feature: gene Location: 1415-1585 bp Feature: gene Location: 5508-6203 bp Feature: domain Description: PRK15211 Location: 5514-6195 bp Feature: domain Description: PRK15211 Location: 5514 -6195 bp Feature: gene Location: 6210-6791 bp Feature: gene Location: 6935-7753 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7118-7559 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7118-7559 bp Feature: gene Location: 7782-8618 bp Feature: gene Location: 9185-9586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, PRK15211 (fimbrial chaperone), RVT-UG4