myRT

myRT report for GCA_004790705.1_Denovo_assembly

Download annotations/find similar RTs

Seq: SOYT01000045.1 (13899 bp)
Overview 1 RT 1: 5988-9172 bp Neighborhood of RT #1 [5988, 9172] PRK10276 RVT-GII Feature: gene Location: 5988-6413 bp Feature: domain Description: PRK10276 Location: 5991-6399 bp Feature: domain Description: PRK1 0276 Location: 5991 -6399 bp Feature: gene Location: 6531-6764 bp Feature: gene Location: 6815-8326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7220-7934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7220-7934 bp Feature: gene Location: 8560-8790 bp Feature: gene Location: 8849-9172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SOYT01000021.1 (63618 bp)
Overview 1 RT 1: 3116-7346 bp Neighborhood of RT #1 [3116, 7354] RVT-GII PRK10276 umuC Feature: gene Location: 3116-3550 bp Feature: gene Location: 3629-4063 bp Feature: gene Location: 4088-5575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-5183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-5183 bp Feature: gene Location: 5661-6083 bp Feature: domain Description: PRK10276 Location: 5667-6069 bp Feature: domain Description: PRK102 76 Location: 5667-6069 bp Feature: gene Location: 6083-7354 bp Feature: domain Description: umuC Location: 6086-7346 bp Feature: domain Description: umuC Location: 6086-7346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: SOYT01000006.1 (335200 bp)
Overview 1 RT 1: 296467-303335 bp Neighborhood of RT #1 [296467, 303337] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 296467-297195 bp Feature: domain Description: FimC Location: 296515-297178 bp Feature: domain Description: FimC Location: 296515-297178 bp Feature: gene Location: 297227-299836 bp Feature: domain Description: FimD Location: 297284-299825 bp Feature: domain Description: FimD Location: 297284-299825 bp Feature: gene Location: 299836-301914 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 300244-300688 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 00244-3 00688 bp Feature: gene Location: 301971-302411 bp Feature: domain Description: Integrase_1 Location: 301977-302193 bp Feature: domain Description: Integrase_1 Location: 3 01977-3 02193 bp Feature: gene Location: 302672-303337 bp Feature: domain Description: INT_P4_C Location: 302777-303335 bp Feature: domain Description: INT_P4_C Location: 3 02777-3 03 3 3 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: SOYT01000012.1 (197824 bp)
Overview 1 RT 1: 71692-78536 bp Neighborhood of RT #1 [71692, 78793] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 71692-71997 bp Feature: gene Location: 72880-75156 bp Feature: domain Description: AAA_15 Location: 72913-73921 bp Feature: domain Description: AAA_15 Location: 72913-73921 bp Feature: gene Location: 75271-76371 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75451-75985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 754 51-75985 bp Feature: gene Location: 77027-77896 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 77549-77720 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 7754 9-77720 bp Feature: gene Location: 78317-78793 bp Feature: domain Description: HTH_23 Location: 78395-78536 bp Feature: domain Description: HTH_23 Location: 78395-78536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)