myRT

myRT report for GCA_004792655.1_ASM479265v1

Download annotations/find similar RTs

Seq: SRZC01000020.1 (80860 bp)
Overview 1 RT 1: 58972-67301 bp Neighborhood of RT #1 [58972, 67301] Lipase_GDSL_2 PRK12391 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 58972-59781 bp Ori: TGX81006.1 Feature: domain Description: Lipase_GDSL_2 Location: 59080-59731 bp Feature: domain Description: Lipase_GDSL_2 Location: 59080-59731 bp Feature: gene Location: 60259-61626 bp Ori: TGX81007.1 Feature: domain Description: PRK12391 Location: 60277-61552 bp Feature: domain Description: PRK1 2391 Location: 60277-61 552 bp Feature: gene Location: 63281-65533 bp Ori: TGX81008.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 63488-64094 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 63488-64094 bp Feature: domain Description: Cas1_I-II-III Location: 64547-65492 bp Feature: domain Description: Cas1 _I-II-III Location: 64547-65492 bp Feature: gene Location: 65527-65823 bp Ori: TGX81009.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 65557-65767 bp Feature: domain Description: Cas2_I_II_III Location: 65557-65767 bp Feature: gene Location: 65838-67301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipase_GDSL_2 (pfam13472), PRK12391 (TrpB-like pyridoxal phosphate-dependent enzyme), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: SRZC01000013.1 (101345 bp)
Overview 1 RT 1: 554-9410 bp Neighborhood of RT #1 [554, 9412] RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Feature: gene Location: 554-1820 bp Feature: gene Location: 1822-3489 bp Ori: TGX81802.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1876-2119 bp Feature: domain Description: RVT_N Location: 1876-2 119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164-2812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 164-2 812 bp Feature: domain Description: GIIM Note: maturase Location: 2866-3097 bp Feature: domain Description: GIIM Note: maturase Location: 2 866-3097 bp Feature: gene Location: 4147-8835 bp Ori: TGX81803.1 Feature: domain Description: N6_Mtase Location: 4459-5062 bp Feature: domain Description: N6_Mtase Location: 4459-5062 bp Feature: domain Description: COG4646 Location: 6391-8452 bp Feature: domain Description: COG4646 Location: 6391-8452 bp Feature: gene Location: 8825-9412 bp Ori: TGX81804.1 Feature: domain Description: DUF1896 Location: 8990-9410 bp Feature: domain Description: DUF1896 Location: 8990-9410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: SRZC01000025.1 (53436 bp)
Overview 1 RT 1: 38573-47337 bp Neighborhood of RT #1 [38573, 47387] Mob_Pre SMC_prok_B RVT-AbiP2 rpsA KOG1803 KOG1803 Feature: gene Location: 38573-40126 bp Feature: domain Description: Mob_Pre Location: 38984-39302 bp Feature: domain Description: Mob_Pre Location: 3 8984-3 93 02 bp Feature: domain Description: SMC_prok_B Location: 39314-39887 bp Feature: domain Description: SMC_prok_B Location: 3 93 14-3 9887 bp Feature: gene Location: 40129-40425 bp Feature: gene Location: 40597-42210 bp Ori: TGX80537.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 41023-41479 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 41023 -41479 bp Feature: gene Location: 42185-43741 bp Ori: TGX80538.1 Feature: domain Description: rpsA Location: 42485-43733 bp Feature: domain Description: rpsA Location: 42485-43 73 3 bp Feature: gene Location: 43743-47387 bp Ori: TGX80539.1 Feature: domain Description: KOG1803 Location: 45486-46008 bp Feature: domain Description: KOG1803 Location: 45486-46008 bp Feature: domain Description: KOG1803 Location: 46302-47337 bp Feature: domain Description: KOG1803 Location: 463 02-473 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), SMC_prok_B (TIGR02168), RVT-AbiP2, rpsA (TIGR00717), KOG1803 (KOG1803, DNA helicase )

Seq: SRZC01000007.1 (142415 bp)
Overview 1 RT 1: 32195-44141 bp 2 RT 2: 88991-94689 bp Neighborhood of RT #1 [32195, 44141] DUF4376 RVT-DGRs Avd_like Neighborhood of RT #2 [88991, 94689] RVT-UG27 Feature: gene Location: 32195-32914 bp Feature: gene Location: 34873-35526 bp Ori: TGX82775.1 Feature: domain Description: DUF4376 Location: 35182-35467 bp Feature: domain Description: DUF4 376 Location: 35182-354 67 bp Feature: gene Location: 35538-36839 bp Ori: TGX82776.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35811-36537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35811-36537 bp Feature: gene Location: 37006-37521 bp Ori: TGX82777.1 Feature: domain Description: Avd_like Location: 37180-37486 bp Feature: domain Description: Avd_like Location: 37180-374 86 bp Feature: gene Location: 37581-44141 bp Feature: gene Location: 88991-89656 bp Feature: gene Location: 89901-90245 bp Feature: gene Location: 90496-91758 bp Ori: TGX82831.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 90685-91318 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 90685-91318 bp Feature: gene Location: 93116-93577 bp Feature: gene Location: 93592-94689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs, Avd_like (cd16376), RVT-UG27