myRT

myRT report for GCA_004793545.1_ASM479354v1

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Seq: SRYA01000249.1 (531 bp)
Overview 1 RT 1: 2-527 bp Neighborhood of RT #1 [2, 529] RVT-GII Feature: gene Location: 2-529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SRYA01000170.1 (3366 bp)
Overview 1 RT 1: 66-1500 bp Neighborhood of RT #1 [66, 1500] RVT-GII RVT_N Feature: gene Location: 66-497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-495 bp Feature: gene Location: 481-888 bp Feature: domain Description: RVT_N Location: 526-763 bp Feature: domain Description: RVT_N Location: 52 6-763 bp Feature: gene Location: 1168-1500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: SRYA01000015.1 (101475 bp)
Overview 1 RT 1: 4338-8593 bp Neighborhood of RT #1 [4338, 8724] xxxLxxG_by_4 xxxLxxG_by_4 MA xxxLxxG_by_4 xxxLxxG_by_4 RVT-GII DDE_Tnp_IS66 Feature: gene Location: 4338-6500 bp Feature: domain Description: xxxLxxG_by_4 Location: 5064-5136 bp Feature: domain Description: xxxLxxG_by_4 Location: 5064-513 6 bp Feature: domain Description: xxxLxxG_by_4 Location: 5148-5223 bp Feature: domain Description: xxxLxxG_by_4 Location: 5148-5223 bp Feature: domain Description: MA Location: 5316-5664 bp Feature: domain Description: MA Location: 53 16-5664 bp Feature: domain Description: xxxLxxG_by_4 Location: 6009-6087 bp Feature: domain Description: xxxLxxG_by_4 Location: 6009-6087 bp Feature: domain Description: xxxLxxG_by_4 Location: 6135-6213 bp Feature: domain Description: xxxLxxG_by_4 Location: 613 5-6213 bp Feature: gene Location: 6884-7111 bp Feature: gene Location: 7142-7504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7148-7484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7148-7484 bp Feature: gene Location: 8090-8236 bp Feature: gene Location: 8311-8724 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8434-8593 bp Feature: domain Description: DDE_Tnp_IS66 Location: 843 4-8593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xxxLxxG_by_4 (TIGR03057), MA (smart00283), RVT-GII, DDE_Tnp_IS66 (pfam03050)

Seq: SRYA01000134.1 (6888 bp)
Overview 1 RT 1: 319-2538 bp Neighborhood of RT #1 [319, 2538] RVT-GII DUF1016_N Feature: gene Location: 319-567 bp Feature: gene Location: 660-830 bp Feature: gene Location: 898-1716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1708 bp Feature: gene Location: 1904-2173 bp Feature: domain Description: DUF1016_N Location: 1910-2141 bp Feature: domain Description: DUF1016_N Location: 1910-214 1 bp Feature: gene Location: 2347-2538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1016_N (pfam17761)

Seq: SRYA01000036.1 (49343 bp)
Overview 1 RT 1: 25546-41963 bp Neighborhood of RT #1 [25546, 41980] ArdC LPD28 YodL DUF3849 LPD18 LPD16 NT_KNTase_like RVT_N RVT-GII GIIM YtxK COG4646 KOG1000 Feature: gene Location: 25546-30321 bp Feature: domain Description: ArdC Location: 25753-26344 bp Feature: domain Description: ArdC Location: 25 75 3-26344 bp Feature: domain Description: LPD28 Location: 27235-27514 bp Feature: domain Description: LPD28 Location: 27235 -275 14 bp Feature: domain Description: YodL Location: 27619-27913 bp Feature: domain Description: YodL Location: 27619-27913 bp Feature: domain Description: DUF3849 Location: 27985-28360 bp Feature: domain Description: DUF3849 Location: 27985 -28360 bp Feature: domain Description: LPD18 Location: 28390-28636 bp Feature: domain Description: LPD18 Location: 28390-28636 bp Feature: domain Description: LPD16 Location: 28954-29185 bp Feature: domain Description: LPD16 Location: 2895 4-29185 bp Feature: domain Description: NT_KNTase_like Location: 29362-29566 bp Feature: domain Description: NT_KNTase_like Location: 29362-295 66 bp Feature: gene Location: 30425-31492 bp Feature: gene Location: 31493-33373 bp Feature: domain Description: RVT_N Location: 31748-31991 bp Feature: domain Description: RVT_N Location: 31748-31991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32036-32681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32036-32681 bp Feature: domain Description: GIIM Note: maturase Location: 32738-32969 bp Feature: domain Description: GIIM Note: maturase Location: 32738-32969 bp Feature: gene Location: 33433-33582 bp Feature: gene Location: 33746-41980 bp Feature: domain Description: YtxK Location: 38483-38852 bp Feature: domain Description: YtxK Location: 38483-3885 2 bp Feature: domain Description: COG4646 Location: 38924-41483 bp Feature: domain Description: COG4646 Location: 38924-41483 bp Feature: domain Description: KOG1000 Location: 41837-41963 bp Feature: domain Description: KOG1000 Location: 41837-41963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191), DUF3849 (pfam12960), LPD18 (pfam18832), LPD16 (pfam18830), NT_KNTase_like (cd05403), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: SRYA01000044.1 (40073 bp)
Overview 1 RT 1: 28254-32781 bp Neighborhood of RT #1 [28254, 32781] COG5301 Avd_like RVT-DGRs Feature: gene Location: 28254-28985 bp Feature: domain Description: COG5301 Location: 28257-28767 bp Feature: domain Description: COG5301 Location: 28257-2876 7 bp Feature: gene Location: 28978-29406 bp Feature: domain Description: Avd_like Location: 29038-29374 bp Feature: domain Description: Avd_like Location: 29038-29374 bp Feature: gene Location: 29628-30944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29946-30558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29946 -30558 bp Feature: gene Location: 30880-32598 bp Feature: gene Location: 32611-32781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5301 (Phage-related tail fibre protein ), Avd_like (cd16376), RVT-DGRs

Seq: SRYA01000082.1 (19379 bp)
Overview 1 RT 1: 8037-12768 bp Neighborhood of RT #1 [8037, 12770] VirD4 VirD4 RVT-GII Intron_maturas2 HNHc TraG-D_C Maff2 Feature: gene Location: 8037-9272 bp Feature: domain Description: VirD4 Location: 8268-8583 bp Feature: domain Description: VirD4 Location: 8268-8583 bp Feature: domain Description: VirD4 Location: 8676-9228 bp Feature: domain Description: VirD4 Location: 867 6-9228 bp Feature: gene Location: 9583-9768 bp Feature: gene Location: 9812-11608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10079-10892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007 9-10892 bp Feature: domain Description: Intron_maturas2 Location: 10964-11390 bp Feature: domain Description: Intron_maturas2 Location: 10964-11390 bp Feature: domain Description: HNHc Note: nucleases Location: 11432-11591 bp Feature: domain Description: HNHc Note: nucleases Location: 11432-11591 bp Feature: gene Location: 11639-12391 bp Feature: domain Description: TraG-D_C Location: 11819-12173 bp Feature: domain Description: TraG-D_C Location: 11819-1217 3 bp Feature: gene Location: 12516-12770 bp Feature: domain Description: Maff2 Location: 12636-12768 bp Feature: domain Description: Maff2 Location: 12636-127 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: SRYA01000268.1 (390 bp)
Overview 1 RT 1: 3-333 bp Neighborhood of RT #1 [3, 353] RVT-GII Feature: gene Location: 3-353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SRYA01000214.1 (1186 bp)
Overview 1 RT 1: 3-939 bp Neighborhood of RT #1 [3, 939] RVT-GII Feature: gene Location: 3-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267-579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267-579 bp Feature: gene Location: 577-717 bp Feature: gene Location: 751-939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SRYA01000219.1 (898 bp)
Overview 1 RT 1: 381-897 bp Neighborhood of RT #1 [381, 896] RVT-GII Feature: gene Location: 381-896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SRYA01000068.1 (23763 bp)
Overview 1 RT 1: 1962-9320 bp Neighborhood of RT #1 [1962, 9367] AAA_15 RVT-Retrons DUF820 SIR2_2 GroEL SLR Feature: gene Location: 1962-2972 bp Feature: gene Location: 3140-5167 bp Feature: domain Description: AAA_15 Location: 3143-4064 bp Feature: domain Description: AAA_15 Location: 3143-4064 bp Feature: gene Location: 5354-6460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5465-6080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5465-6080 bp Feature: gene Location: 6822-7376 bp Feature: domain Description: DUF820 Location: 6855-7278 bp Feature: domain Description: DUF820 Location: 6855-7278 bp Feature: gene Location: 7427-9367 bp Feature: domain Description: SIR2_2 Location: 7847-8276 bp Feature: domain Description: SIR2_2 Location: 7847-8276 bp Feature: domain Description: GroEL Location: 8477-8996 bp Feature: domain Description: GroEL Location: 8477-8996 bp Feature: domain Description: SLR Location: 9047-9320 bp Feature: domain Description: SLR Location: 9047-9320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, DUF820, SIR2_2 (pfam13289), GroEL (TIGR02348), SLR (sd00010)

Seq: SRYA01000131.1 (7006 bp)
Overview 1 RT 1: 2192-6981 bp Neighborhood of RT #1 [2192, 6981] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM Feature: gene Location: 2192-2626 bp Feature: domain Description: PrgI Location: 2207-2477 bp Feature: domain Description: PrgI Location: 2207-2477 bp Feature: gene Location: 2526-4094 bp Feature: domain Description: VirB4_CagE Location: 2697-3150 bp Feature: domain Description: VirB4_CagE Location: 2697-3150 bp Feature: domain Description: VirB4_CagE Location: 3243-3867 bp Feature: domain Description: VirB4_CagE Location: 3243-3867 bp Feature: domain Description: AAA_10 Location: 3936-4083 bp Feature: domain Description: AAA_10 Location: 3936-4083 bp Feature: gene Location: 4611-6314 bp Feature: domain Description: RVT_N Location: 4713-4956 bp Feature: domain Description: RVT_N Location: 4713-4956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5001-5661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5001-5661 bp Feature: domain Description: GIIM Note: maturase Location: 5715-5949 bp Feature: domain Description: GIIM Note: maturase Location: 5715-5949 bp Feature: gene Location: 6319-6981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SRYA01000175.1 (2799 bp)
Overview 1 RT 1: 98-2797 bp Neighborhood of RT #1 [98, 2797] RVT-GII HNHc Feature: gene Location: 98-2023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1148 bp Feature: domain Description: HNHc Note: nucleases Location: 1763-1895 bp Feature: domain Description: HNHc Note: nucleases Location: 1763-1895 bp Feature: gene Location: 2077-2313 bp Feature: gene Location: 2510-2797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: SRYA01000039.1 (44957 bp)
Overview 1 RT 1: 41866-44739 bp Neighborhood of RT #1 [41866, 44768] TrmA RVT-GII Feature: gene Location: 41866-43443 bp Feature: domain Description: TrmA Location: 41926-43336 bp Feature: domain Description: TrmA Location: 41926-43336 bp Feature: gene Location: 43730-43897 bp Feature: gene Location: 43911-44768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44262-44739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44262-44739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmA (COG2265), RVT-GII

Seq: SRYA01000101.1 (12711 bp)
Overview 1 RT 1: 173-1640 bp 2 RT 2: 9097-12709 bp Neighborhood of RT #1 [173, 1651] RVT-GII Sigma70_r4_2 FliA Neighborhood of RT #2 [9097, 12709] PIN_8 RVT-GII Feature: gene Location: 173-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-371 bp Feature: gene Location: 487-912 bp Feature: domain Description: Sigma70_r4_2 Location: 790-898 bp Feature: domain Description: Sigma70_r4_2 Location: 790-898 bp Feature: gene Location: 998-1651 bp Feature: domain Description: FliA Location: 1322-1640 bp Feature: domain Description: FliA Location: 1322-1640 bp Feature: gene Location: 9097-9306 bp Feature: gene Location: 9569-11386 bp Feature: domain Description: PIN_8 Location: 9617-10307 bp Feature: domain Description: PIN_8 Location: 9617-10307 bp Feature: gene Location: 11645-12157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11996-12149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11996-12149 bp Feature: gene Location: 12171-12332 bp Feature: gene Location: 12479-12709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Sigma70_r4_2 (pfam08281), FliA (COG1191), PIN_8 (pfam18476)

Seq: SRYA01000093.1 (15445 bp)
Overview 1 RT 1: 11701-15444 bp Neighborhood of RT #1 [11701, 15444] RVT_N RVT-GII GIIM Feature: gene Location: 11701-12069 bp Feature: gene Location: 12081-12935 bp Feature: gene Location: 12936-14816 bp Feature: domain Description: RVT_N Location: 13191-13434 bp Feature: domain Description: RVT_N Location: 13191-13434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13479-14124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13479-14124 bp Feature: domain Description: GIIM Note: maturase Location: 14181-14412 bp Feature: domain Description: GIIM Note: maturase Location: 14181-14412 bp Feature: gene Location: 14998-15444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SRYA01000026.1 (73119 bp)
Overview 1 RT 1: 31828-34282 bp Neighborhood of RT #1 [31828, 34282] Avd_like RVT-DGRs Feature: gene Location: 31828-32223 bp Feature: domain Description: Avd_like Location: 31891-32194 bp Feature: domain Description: Avd_like Location: 31891-32194 bp Feature: gene Location: 32227-32388 bp Feature: gene Location: 32549-33601 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32759-33374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32759-33374 bp Feature: gene Location: 33623-33979 bp Feature: gene Location: 34040-34282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: SRYA01000085.1 (18118 bp)
Overview 1 RT 1: 3-2029 bp Neighborhood of RT #1 [3, 2029] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 3-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-573 bp Feature: domain Description: Intron_maturas2 Location: 642-972 bp Feature: domain Description: Intron_maturas2 Location: 642-972 bp Feature: gene Location: 1442-1864 bp Feature: domain Description: TraG-D_C Location: 1448-1730 bp Feature: domain Description: TraG-D_C Location: 1448-1730 bp Feature: gene Location: 1892-2029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: SRYA01000070.1 (23693 bp)
Overview 1 RT 1: 3-4826 bp Neighborhood of RT #1 [3, 4840] RVT-GII GIIM RVT-GII GIIM SunT rSAM_ocin_clost Feature: gene Location: 3-782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-399 bp Feature: domain Description: GIIM Note: maturase Location: 480-696 bp Feature: domain Description: GIIM Note: maturase Location: 480-696 bp Feature: gene Location: 862-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1003 bp Feature: domain Description: GIIM Note: maturase Location: 1057-1288 bp Feature: domain Description: GIIM Note: maturase Location: 1057-1288 bp Feature: gene Location: 1744-3462 bp Feature: domain Description: SunT Location: 1768-3421 bp Feature: domain Description: SunT Location: 1768-3421 bp Feature: gene Location: 3446-4840 bp Feature: domain Description: rSAM_ocin_clost Location: 3461-4826 bp Feature: domain Description: rSAM_ocin_clost Location: 3461-4826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SunT (COG2274), rSAM_ocin_clost (TIGR04068)

Seq: SRYA01000154.1 (4754 bp)
Overview 1 RT 1: 1-4388 bp Neighborhood of RT #1 [1, 4438] RVT-GII group_II_RT_mat DUF772 DDE_Tnp_1_6 Feature: gene Location: 1-582 bp Feature: gene Location: 803-1048 bp Feature: gene Location: 1146-1940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401-1938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401-1938 bp Feature: gene Location: 1962-2444 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1965-2352 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1965-2352 bp Feature: gene Location: 2813-4438 bp Feature: domain Description: DUF772 Location: 3014-3203 bp Feature: domain Description: DUF772 Location: 3014-320 3 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4031-4388 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4031-4388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)