myRT

myRT report for GCA_004793585.1_ASM479358v1

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Seq: SRZB01000094.1 (2796 bp)
Overview 1 RT 1: 98-2794 bp Neighborhood of RT #1 [98, 2794] RVT-GII HNHc Feature: gene Location: 98-2023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6-1 1 48 bp Feature: domain Description: HNHc Note: nucleases Location: 1763-1895 bp Feature: domain Description: HNHc Note: nucleases Location: 1 763-1 895 bp Feature: gene Location: 2077-2313 bp Feature: gene Location: 2510-2794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000039.1 (31720 bp)
Overview 1 RT 1: 21325-26810 bp Neighborhood of RT #1 [21325, 26812] DUF3801 VirD4 VirD4 RVT-GII HNHc TraG-D_C Maff2 Feature: gene Location: 21325-21801 bp Feature: domain Description: DUF3801 Location: 21403-21691 bp Feature: domain Description: DUF3801 Location: 2 1403-2 1691 bp Feature: gene Location: 21798-22898 bp Feature: domain Description: VirD4 Location: 22023-22344 bp Feature: domain Description: VirD4 Location: 2 2 02 3-2 2 344 bp Feature: domain Description: VirD4 Location: 22437-22881 bp Feature: domain Description: VirD4 Location: 2 2 437-2 2 881 bp Feature: gene Location: 23649-25553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23964-24696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3964-2 4696 bp Feature: domain Description: HNHc Note: nucleases Location: 25275-25443 bp Feature: domain Description: HNHc Note: nucleases Location: 2 52 75-2 5443 bp Feature: gene Location: 25687-26433 bp Feature: domain Description: TraG-D_C Location: 25861-26215 bp Feature: domain Description: TraG-D_C Location: 2 5861-2 62 15 bp Feature: gene Location: 26558-26812 bp Feature: domain Description: Maff2 Location: 26678-26810 bp Feature: domain Description: Maff2 Location: 2 6678-2 6810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000020.1 (68600 bp)
Overview 1 RT 1: 37403-45645 bp Neighborhood of RT #1 [37403, 45671] Avd_like RVT-DGRs RVT-DGRs LRR_3 AAA-ATPase_like PDDEXK_9 Feature: gene Location: 37403-37795 bp Feature: domain Description: Avd_like Location: 37433-37772 bp Feature: domain Description: Avd_like Location: 3 743 3 -3 7772 bp Feature: gene Location: 37841-38002 bp Feature: gene Location: 38140-38556 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38335-38449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 83 3 5-3 8449 bp Feature: gene Location: 38429-39022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38441-38747 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 8441-3 8747 bp Feature: gene Location: 38991-43724 bp Feature: domain Description: LRR_3 Location: 43452-43653 bp Feature: domain Description: LRR_3 Location: 43 452-43 653 bp Feature: gene Location: 43809-45671 bp Feature: domain Description: AAA-ATPase_like Location: 43977-44850 bp Feature: domain Description: AAA-ATPase_like Location: 43 977-44850 bp Feature: domain Description: PDDEXK_9 Location: 45327-45645 bp Feature: domain Description: PDDEXK_9 Location: 453 27-45645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000044.1 (24774 bp)
Overview 1 RT 1: 19466-24624 bp Neighborhood of RT #1 [19466, 24746] PrgI RVT-GII HNHc TraC-F-type Feature: gene Location: 19466-19888 bp Feature: domain Description: PrgI Location: 19481-19754 bp Feature: domain Description: PrgI Location: 194 81-19754 bp Feature: gene Location: 19818-20876 bp Feature: gene Location: 21600-23573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21936-22674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21936-22674 bp Feature: domain Description: HNHc Note: nucleases Location: 23229-23367 bp Feature: domain Description: HNHc Note: nucleases Location: 23229-23367 bp Feature: gene Location: 23709-24746 bp Feature: domain Description: TraC-F-type Location: 23733-24624 bp Feature: domain Description: TraC-F-type Location: 23733-24 624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000027.1 (45926 bp)
Overview 1 RT 1: 40753-45116 bp Neighborhood of RT #1 [40753, 45220] pfam12571 RVT-DGRs DUF16 Feature: gene Location: 40753-41355 bp Feature: domain Description: pfam12571 Location: 40777-41071 bp Feature: domain Description: pfam125 71 Location: 40777-41071 bp Feature: gene Location: 41355-42644 bp Feature: gene Location: 43048-44280 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43342-43963 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43342-43963 bp Feature: gene Location: 44624-44818 bp Feature: gene Location: 44912-45220 bp Feature: domain Description: DUF16 Location: 44927-45116 bp Feature: domain Description: DUF16 Location: 44927-45 116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000026.1 (49752 bp)
Overview 1 RT 1: 12350-23938 bp Neighborhood of RT #1 [12350, 23938] T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C PRK13857 PrgI TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 12350-13573 bp Feature: domain Description: T4SS-DNA_transf Location: 12719-13562 bp Feature: domain Description: T4SS-DNA_transf Location: 12719-1356 2 bp Feature: gene Location: 14030-14167 bp Feature: gene Location: 14169-15980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14433-15264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14433-1526 4 bp Feature: domain Description: Intron_maturas2 Location: 15333-15663 bp Feature: domain Description: Intron_maturas2 Location: 15333-156 6 3 bp Feature: gene Location: 16154-16678 bp Feature: domain Description: TraG-D_C Location: 16157-16424 bp Feature: domain Description: TraG-D_C Location: 16 157-16 424 bp Feature: gene Location: 16693-17049 bp Feature: domain Description: PRK13857 Location: 16762-17032 bp Feature: domain Description: PRK13857 Location: 16 76 2-17032 bp Feature: gene Location: 18259-18747 bp Feature: domain Description: PrgI Location: 18271-18541 bp Feature: domain Description: PrgI Location: 18271-18541 bp Feature: gene Location: 18740-20851 bp Feature: domain Description: TraC-F-type Location: 19031-20816 bp Feature: domain Description: TraC-F-type Location: 19031-20816 bp Feature: gene Location: 21347-23146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21614-22433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216 14-22433 bp Feature: domain Description: Intron_maturas2 Location: 22523-22823 bp Feature: domain Description: Intron_maturas2 Location: 22523-22823 bp Feature: gene Location: 23227-23529 bp Feature: gene Location: 23534-23938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000010.1 (86431 bp)
Overview 1 RT 1: 7364-23043 bp Neighborhood of RT #1 [7364, 23798] YtxK COG4646 KOG1000 RVT_N RVT-GII GIIM ArdC LPD28 YodL DUF3849 LPD18 LPD16 NT_KNTase_like Feature: gene Location: 7364-15598 bp Feature: domain Description: YtxK Location: 12101-12470 bp Feature: domain Description: YtxK Location: 12101-1247 0 bp Feature: domain Description: COG4646 Location: 12542-15101 bp Feature: domain Description: COG4646 Location: 12542-15101 bp Feature: domain Description: KOG1000 Location: 15455-15581 bp Feature: domain Description: KOG1000 Location: 15455-15581 bp Feature: gene Location: 15762-15911 bp Feature: gene Location: 15956-17851 bp Feature: domain Description: RVT_N Location: 16226-16469 bp Feature: domain Description: RVT_N Location: 16226-16469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16514-17159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16514-17 159 bp Feature: domain Description: GIIM Note: maturase Location: 17216-17447 bp Feature: domain Description: GIIM Note: maturase Location: 17 216-17 447 bp Feature: gene Location: 17852-18919 bp Feature: gene Location: 19023-23798 bp Feature: domain Description: ArdC Location: 19230-19821 bp Feature: domain Description: ArdC Location: 19230-19821 bp Feature: domain Description: LPD28 Location: 20712-20991 bp Feature: domain Description: LPD28 Location: 207 12-20991 bp Feature: domain Description: YodL Location: 21096-21390 bp Feature: domain Description: YodL Location: 21096-21390 bp Feature: domain Description: DUF3849 Location: 21462-21837 bp Feature: domain Description: DUF3849 Location: 21462-21837 bp Feature: domain Description: LPD18 Location: 21867-22113 bp Feature: domain Description: LPD18 Location: 21867 -22113 bp Feature: domain Description: LPD16 Location: 22431-22662 bp Feature: domain Description: LPD16 Location: 22431-22662 bp Feature: domain Description: NT_KNTase_like Location: 22839-23043 bp Feature: domain Description: NT_KNTase_like Location: 22839-23043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SRZB01000018.1 (69634 bp)
Overview 1 RT 1: 43662-48090 bp Neighborhood of RT #1 [43662, 48090] MobC HELICc RVT-GII HNHc Feature: gene Location: 43662-43943 bp Feature: domain Description: MobC Location: 43794-43896 bp Feature: domain Description: MobC Location: 43794-438 96 bp Feature: gene Location: 44000-45613 bp Feature: domain Description: HELICc Location: 44198-44663 bp Feature: domain Description: HELICc Location: 44198 -44663 bp Feature: gene Location: 45620-47530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45929-46670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45929-46670 bp Feature: domain Description: HNHc Note: nucleases Location: 47258-47384 bp Feature: domain Description: HNHc Note: nucleases Location: 47258 -4738 4 bp Feature: gene Location: 47577-47855 bp Feature: gene Location: 47956-48090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT