myRT

myRT report for GCA_004793675.1_ASM479367v1

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Seq: SRYX01000013.1 Bacteroides caecimuri strain NM63_1-25 NODE_13_length_71419_cov_374.03, whole genome shotgun sequence (71419 bp)
Overview 1 RT 1: 63079-66728 bp Neighborhood of RT #1 [63079, 66728] RVT-DGRs Feature: gene Location: 63079-63459 bp Feature: gene Location: 63456-63884 bp Feature: gene Location: 63847-65034 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64177-64876 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 641 77-64876 bp Feature: gene Location: 65156-65293 bp Feature: gene Location: 65367-66728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SRYX01000003.1 Bacteroides caecimuri strain NM63_1-25 NODE_3_length_132937_cov_302.309, whole genome shotgun sequence (132937 bp)
Overview 1 RT 1: 50170-61768 bp Neighborhood of RT #1 [50170, 61890] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 50170-50316 bp Feature: gene Location: 50400-52589 bp Feature: gene Location: 52795-53925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53116-53659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53116-53659 bp Feature: gene Location: 53962-59994 bp Feature: domain Description: DUF4011 Location: 55192-55705 bp Feature: domain Description: DUF4011 Location: 55192 -55705 bp Feature: domain Description: DEXXQc_SF1 Location: 56044-56473 bp Feature: domain Description: DEXXQc_SF1 Location: 56044-56473 bp Feature: domain Description: DEXXQc_SF1 Location: 57472-58231 bp Feature: domain Description: DEXXQc_SF1 Location: 57472 -582 31 bp Feature: domain Description: TIGR00376 Location: 58360-58750 bp Feature: domain Description: TIGR00376 Location: 58360-58750 bp Feature: domain Description: MTES_1575 Location: 58903-59188 bp Feature: domain Description: MTES_1575 Location: 58903-59188 bp Feature: domain Description: DUF3320 Location: 59509-59644 bp Feature: domain Description: DUF332 0 Location: 59509-59644 bp Feature: gene Location: 60091-61890 bp Feature: domain Description: rpsA Location: 60160-61768 bp Feature: domain Description: rpsA Location: 60160-61768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: SRYX01000044.1 Bacteroides caecimuri strain NM63_1-25 NODE_44_length_36600_cov_345.841, whole genome shotgun sequence (36600 bp)
Overview 1 RT 1: 13295-17192 bp Neighborhood of RT #1 [13295, 17266] UT RVT-GII RVT-GII RVT-GII GIIM HxlR Cupin_2 Feature: gene Location: 13295-14155 bp Feature: domain Description: UT Location: 13325-14129 bp Feature: domain Description: UT Location: 13 3 25-14129 bp Feature: gene Location: 14377-14712 bp Feature: gene Location: 15029-15457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15242-15428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15242-15428 bp Feature: gene Location: 15411-16139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15432-15528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1543 2-15528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15537-15741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553 7-15741 bp Feature: domain Description: GIIM Note: maturase Location: 15822-16029 bp Feature: domain Description: GIIM Note: maturase Location: 15822-16029 bp Feature: gene Location: 16249-16632 bp Feature: domain Description: HxlR Location: 16270-16612 bp Feature: domain Description: HxlR Location: 16270-16612 bp Feature: gene Location: 16817-17266 bp Feature: domain Description: Cupin_2 Location: 16985-17192 bp Feature: domain Description: Cupin_2 Location: 16985-17192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UT (pfam03253), RVT-GII, GIIM (pfam08388), HxlR (pfam01638), Cupin_2 (pfam07883)

Seq: SRYX01000004.1 Bacteroides caecimuri strain NM63_1-25 NODE_4_length_124242_cov_400.263, whole genome shotgun sequence (124242 bp)
Overview 1 RT 1: 28245-32122 bp Neighborhood of RT #1 [28245, 32127] DUF3791 RVT-GII GIIM TIGR00043 SpmA SpmB Feature: gene Location: 28245-28460 bp Feature: domain Description: DUF3791 Location: 28269-28446 bp Feature: domain Description: DUF3791 Location: 28269-284 4 6 bp Feature: gene Location: 28589-28717 bp Feature: gene Location: 28886-30292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29228-29846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29228-2984 6 bp Feature: domain Description: GIIM Note: maturase Location: 29903-30131 bp Feature: domain Description: GIIM Note: maturase Location: 29903-30131 bp Feature: gene Location: 30459-30878 bp Feature: domain Description: TIGR00043 Location: 30570-30867 bp Feature: domain Description: TIGR0004 3 Location: 30570-30867 bp Feature: gene Location: 30895-32127 bp Feature: domain Description: SpmA Location: 30904-31504 bp Feature: domain Description: SpmA Location: 30904 -31504 bp Feature: domain Description: SpmB Location: 31639-32122 bp Feature: domain Description: SpmB Location: 31639-32122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3791 (pfam12668), RVT-GII, GIIM (pfam08388), TIGR00043 (rRNA maturation RNase YbeY), SpmA (COG2715), SpmB (COG0700)

Seq: SRYX01000065.1 Bacteroides caecimuri strain NM63_1-25 NODE_65_length_23102_cov_271.349, whole genome shotgun sequence (23102 bp)
Overview 1 RT 1: 21-5818 bp Neighborhood of RT #1 [21, 5826] RVT-GII Intron_maturas2 HNHc PRK07726 AraC_binding AraC Feature: gene Location: 21-686 bp Feature: gene Location: 806-1081 bp Feature: gene Location: 1288-3090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552-2374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 5 2-2374 bp Feature: domain Description: Intron_maturas2 Location: 2518-2773 bp Feature: domain Description: Intron_maturas2 Location: 25 18-2773 bp Feature: domain Description: HNHc Note: nucleases Location: 2929-3070 bp Feature: domain Description: HNHc Note: nucleases Location: 2929-3070 bp Feature: gene Location: 3068-4921 bp Feature: domain Description: PRK07726 Location: 3206-4733 bp Feature: domain Description: PRK07726 Location: 3206-4733 bp Feature: gene Location: 4990-5826 bp Feature: domain Description: AraC_binding Location: 5059-5434 bp Feature: domain Description: AraC_binding Location: 5 05 9-5 434 bp Feature: domain Description: AraC Location: 5488-5818 bp Feature: domain Description: AraC Location: 5 488-5 818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AraC_binding (pfam02311), AraC (COG2207)

Seq: SRYX01000079.1 Bacteroides caecimuri strain NM63_1-25 NODE_79_length_19082_cov_295.336, whole genome shotgun sequence (19082 bp)
Overview 1 RT 1: 194-5444 bp Neighborhood of RT #1 [194, 5444] group_II_RT_mat RVT-GII RVT-GII GIIM CcmA Feature: gene Location: 194-472 bp Feature: gene Location: 677-889 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 755-878 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 755-878 bp Feature: gene Location: 882-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1539 bp Feature: gene Location: 2246-3538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456-3113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456 -3113 bp Feature: domain Description: GIIM Note: maturase Location: 3191-3398 bp Feature: domain Description: GIIM Note: maturase Location: 3191-3398 bp Feature: gene Location: 3708-4607 bp Feature: domain Description: CcmA Location: 3765-4449 bp Feature: domain Description: CcmA Location: 376 5-4449 bp Feature: gene Location: 4614-5444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CcmA (COG4133), group_II_RT_mat (TIGR04416)

Seq: SRYX01000082.1 Bacteroides caecimuri strain NM63_1-25 NODE_82_length_18307_cov_332.969, whole genome shotgun sequence (18307 bp)
Overview 1 RT 1: 13887-18083 bp Neighborhood of RT #1 [13887, 18187] ABC_cobalt_CbiO_domain1 AAA_15 RVT-GII Glyco_hydro_88 SGSH Feature: gene Location: 13887-14750 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 13977-14088 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 1397 7 -14088 bp Feature: domain Description: AAA_15 Location: 14274-14655 bp Feature: domain Description: AAA_15 Location: 1427 4-14655 bp Feature: gene Location: 15075-15263 bp Feature: gene Location: 15394-15717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15658-15712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15658-157 12 bp Feature: gene Location: 16168-17286 bp Feature: domain Description: Glyco_hydro_88 Location: 16360-17275 bp Feature: domain Description: Glyco_hydro_88 Location: 16360-17 27 5 bp Feature: gene Location: 17309-18187 bp Feature: domain Description: SGSH Location: 17312-18083 bp Feature: domain Description: SGSH Location: 17 312-18083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_cobalt_CbiO_domain1 (cd03225), AAA_15 (pfam13175), RVT-GII, Glyco_hydro_88 (pfam07470), SGSH (cd16027)