myRT

myRT report for GCA_004795645.1_ASM479564v1

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Seq: SSDC01000040.1 (35868 bp)
Overview 1 RT 1: 25755-33927 bp Neighborhood of RT #1 [25755, 34121] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25755-27626 bp Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: gene Location: 27630-29411 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: gene Location: 29408-32428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: gene Location: 32425-32982 bp Feature: gene Location: 32982-34121 bp Feature: domain Description: AAA_21 Location: 33054-33123 bp Feature: domain Description: AAA_21 Location: 33054-331 23 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: SSDC01000004.1 (398505 bp)
Overview 1 RT 1: 313401-324134 bp 2 RT 2: 340392-349212 bp Neighborhood of RT #1 [313401, 324136] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [340392, 349241] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 313401-313616 bp Feature: domain Description: NERD Location: 313428-313551 bp Feature: domain Description: NERD Location: 31342 8-313551 bp Feature: gene Location: 313829-314950 bp Feature: domain Description: COG3177 Location: 313847-314939 bp Feature: domain Description: COG3177 Location: 313847-314939 bp Feature: gene Location: 315673-317358 bp Feature: domain Description: RVT_N Location: 315730-315970 bp Feature: domain Description: RVT_N Location: 315730-315970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316018-316654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316018-316654 bp Feature: domain Description: GIIM Note: maturase Location: 316708-316939 bp Feature: domain Description: GIIM Note: maturase Location: 316708-316939 bp Feature: domain Description: HNH Note: nucleases Location: 317191-317329 bp Feature: domain Description: HNH Note: nucleases Location: 317191-31732 9 bp Feature: gene Location: 318439-322176 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 318547-319204 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 318547-3192 04 bp Feature: domain Description: PRK09776 Location: 319417-319888 bp Feature: domain Description: PRK09776 Location: 319417-319888 bp Feature: domain Description: PAS Location: 319945-320470 bp Feature: domain Description: PAS Location: 319945-32 0470 bp Feature: domain Description: PRK10060 Location: 320482-322126 bp Feature: domain Description: PRK10060 Location: 32 0482 -32 2 12 6 bp Feature: gene Location: 322283-324136 bp Feature: domain Description: PRK05658 Location: 322295-324134 bp Feature: domain Description: PRK05658 Location: 32 2 2 95-32 4134 bp Feature: gene Location: 340392-341606 bp Feature: domain Description: PRK10770 Location: 340404-341598 bp Feature: domain Description: PRK10770 Location: 340404-341598 bp Feature: gene Location: 341665-344436 bp Feature: domain Description: LptD Location: 341860-344422 bp Feature: domain Description: LptD Location: 341860-34442 2 bp Feature: gene Location: 344569-346281 bp Feature: domain Description: RVT_N Location: 344626-344869 bp Feature: domain Description: RVT_N Location: 34462 6-344869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344914-345550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344914-345550 bp Feature: domain Description: YkfC Location: 345760-345910 bp Feature: domain Description: YkfC Location: 345760-345910 bp Feature: domain Description: HNH Note: nucleases Location: 346087-346225 bp Feature: domain Description: HNH Note: nucleases Location: 346087-3462 2 5 bp Feature: gene Location: 347554-348570 bp Feature: domain Description: COG3178 Location: 347557-348556 bp Feature: domain Description: COG3178 Location: 347557-348556 bp Feature: gene Location: 348567-349241 bp Feature: domain Description: NTP_transferase_like_1 Location: 348573-349212 bp Feature: domain Description: NTP_transferase_like_1 Location: 348573-3492 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: SSDC01000009.1 (259724 bp)
Overview 1 RT 1: 254194-259661 bp Neighborhood of RT #1 [254194, 259661] CHD CHD RVT-GII GIIM Feature: gene Location: 254194-255738 bp Feature: domain Description: CHD Location: 254410-254824 bp Feature: domain Description: CHD Location: 254410-254824 bp Feature: domain Description: CHD Location: 255052-255541 bp Feature: domain Description: CHD Location: 255052-255541 bp Feature: gene Location: 256822-257001 bp Feature: gene Location: 257733-259001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257946-258603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257946-258603 bp Feature: domain Description: GIIM Note: maturase Location: 258681-258903 bp Feature: domain Description: GIIM Note: maturase Location: 258681-258903 bp Feature: gene Location: 259494-259661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: SSDC01000015.1 (169029 bp)
Overview 1 RT 1: 85650-91236 bp Neighborhood of RT #1 [85650, 91236] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85650-86486 bp Feature: domain Description: HDOD Location: 85653-86481 bp Feature: domain Description: HDOD Location: 85653-864 81 bp Feature: gene Location: 86587-87531 bp Feature: domain Description: YgfZ Location: 86596-87496 bp Feature: domain Description: YgfZ Location: 86596-874 96 bp Feature: gene Location: 89254-90573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89257-89833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89257-89833 bp Feature: domain Description: YkfC Location: 90031-90187 bp Feature: domain Description: YkfC Location: 90031-90187 bp Feature: domain Description: HNH Note: nucleases Location: 90370-90508 bp Feature: domain Description: HNH Note: nucleases Location: 90370-90508 bp Feature: gene Location: 90649-90903 bp Feature: domain Description: SdhE Location: 90655-90895 bp Feature: domain Description: SdhE Location: 90655-90895 bp Feature: gene Location: 91042-91236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)