myRT

myRT report for GCA_004795655.1_ASM479565v1

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Seq: SSDE01000009.1 (241549 bp)
Overview 1 RT 1: 236018-241485 bp Neighborhood of RT #1 [236018, 241485] CHD CHD RVT-GII GIIM Feature: gene Location: 236018-237562 bp Feature: domain Description: CHD Location: 236234-236648 bp Feature: domain Description: CHD Location: 236234-236648 bp Feature: domain Description: CHD Location: 236876-237365 bp Feature: domain Description: CHD Location: 236876-237365 bp Feature: gene Location: 238646-238825 bp Feature: gene Location: 239557-240825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239770-240427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239770-240427 bp Feature: domain Description: GIIM Note: maturase Location: 240505-240727 bp Feature: domain Description: GIIM Note: maturase Location: 240505-240727 bp Feature: gene Location: 241318-241485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: SSDE01000002.1 (395418 bp)
Overview 1 RT 1: 49265-58106 bp 2 RT 2: 74370-85040 bp Neighborhood of RT #1 [49265, 58114] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74370, 85105] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49265-49939 bp Feature: domain Description: NTP_transferase_like_1 Location: 49271-49910 bp Feature: domain Description: NTP_transferase_like_1 Location: 492 71-49910 bp Feature: gene Location: 49936-50952 bp Feature: domain Description: COG3178 Location: 49939-50938 bp Feature: domain Description: COG3178 Location: 49939-50938 bp Feature: gene Location: 52225-53937 bp Feature: domain Description: RVT_N Location: 52282-52525 bp Feature: domain Description: RVT_N Location: 52 2 82 -52 52 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52570-53206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 570-532 06 bp Feature: domain Description: YkfC Location: 53416-53566 bp Feature: domain Description: YkfC Location: 53416-53566 bp Feature: domain Description: HNH Note: nucleases Location: 53743-53881 bp Feature: domain Description: HNH Note: nucleases Location: 53743-53881 bp Feature: gene Location: 54070-56841 bp Feature: domain Description: LptD Location: 54265-56827 bp Feature: domain Description: LptD Location: 542 65-5682 7 bp Feature: gene Location: 56900-58114 bp Feature: domain Description: PRK10770 Location: 56912-58106 bp Feature: domain Description: PRK10770 Location: 56912 -58106 bp Feature: gene Location: 74370-76223 bp Feature: domain Description: PRK05658 Location: 74382-76221 bp Feature: domain Description: PRK05658 Location: 74382 -762 2 1 bp Feature: gene Location: 76330-80067 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76438-77095 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76438-77095 bp Feature: domain Description: PRK09776 Location: 77308-77779 bp Feature: domain Description: PRK09776 Location: 77308-77779 bp Feature: domain Description: PAS Location: 77836-78361 bp Feature: domain Description: PAS Location: 77836-78361 bp Feature: domain Description: PRK10060 Location: 78373-80017 bp Feature: domain Description: PRK10060 Location: 78373-80017 bp Feature: gene Location: 81148-82833 bp Feature: domain Description: RVT_N Location: 81205-81445 bp Feature: domain Description: RVT_N Location: 812 05-81445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81493-82129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81493-82 12 9 bp Feature: domain Description: GIIM Note: maturase Location: 82183-82414 bp Feature: domain Description: GIIM Note: maturase Location: 82 183-82 414 bp Feature: domain Description: HNH Note: nucleases Location: 82666-82804 bp Feature: domain Description: HNH Note: nucleases Location: 82 666-82 804 bp Feature: gene Location: 83556-84677 bp Feature: domain Description: COG3177 Location: 83574-84666 bp Feature: domain Description: COG3177 Location: 83574-84666 bp Feature: gene Location: 84890-85105 bp Feature: domain Description: NERD Location: 84917-85040 bp Feature: domain Description: NERD Location: 84917-85040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: SSDE01000014.1 (184292 bp)
Overview 1 RT 1: 93057-98638 bp Neighborhood of RT #1 [93057, 98643] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93057-93251 bp Feature: gene Location: 93390-93644 bp Feature: domain Description: SdhE Location: 93396-93636 bp Feature: domain Description: SdhE Location: 93 3 96-93 63 6 bp Feature: gene Location: 93720-95039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93723-94299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 723 -94299 bp Feature: domain Description: YkfC Location: 94497-94653 bp Feature: domain Description: YkfC Location: 94497-94653 bp Feature: domain Description: HNH Note: nucleases Location: 94836-94974 bp Feature: domain Description: HNH Note: nucleases Location: 9483 6-94974 bp Feature: gene Location: 96762-97706 bp Feature: domain Description: YgfZ Location: 96771-97671 bp Feature: domain Description: YgfZ Location: 96771-97671 bp Feature: gene Location: 97807-98643 bp Feature: domain Description: HDOD Location: 97810-98638 bp Feature: domain Description: HDOD Location: 97810-9863 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: SSDE01000012.1 (217339 bp)
Overview 1 RT 1: 78251-84179 bp Neighborhood of RT #1 [78251, 84179] resist_ArsH SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf DEXHc_Snf Feature: gene Location: 78251-78973 bp Feature: domain Description: resist_ArsH Location: 78275-78929 bp Feature: domain Description: resist_ArsH Location: 78275-78929 bp Feature: gene Location: 79032-80081 bp Feature: domain Description: SF2_C_SNF Location: 79530-79917 bp Feature: domain Description: SF2_C_SNF Location: 79530-79917 bp Feature: gene Location: 80194-81897 bp Feature: domain Description: RVT_N Location: 80251-80494 bp Feature: domain Description: RVT_N Location: 80251-804 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80539-81175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80539-81175 bp Feature: domain Description: GIIM Note: maturase Location: 81229-81460 bp Feature: domain Description: GIIM Note: maturase Location: 81229-814 60 bp Feature: domain Description: HNHc Note: nucleases Location: 81694-81850 bp Feature: domain Description: HNHc Note: nucleases Location: 81694 -81850 bp Feature: gene Location: 82494-83714 bp Feature: domain Description: DEXHc_Snf Location: 82713-82971 bp Feature: domain Description: DEXHc_Snf Location: 82713-82971 bp Feature: domain Description: DEXHc_Snf Location: 83535-83667 bp Feature: domain Description: DEXHc_Snf Location: 83535-83667 bp Feature: gene Location: 83850-84179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: SSDE01000043.1 (35869 bp)
Overview 1 RT 1: 1749-9060 bp Neighborhood of RT #1 [1749, 10115] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1749-2888 bp Feature: domain Description: AAA_21 Location: 1821-1890 bp Feature: domain Description: AAA_21 Location: 1821-1890 bp Feature: domain Description: AAA_21 Location: 2364-2694 bp Feature: domain Description: AAA_21 Location: 2364-2694 bp Feature: gene Location: 2888-3445 bp Feature: gene Location: 3442-6462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3937-4408 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3937-4408 bp Feature: gene Location: 6459-8240 bp Feature: domain Description: YeeA Location: 7326-8106 bp Feature: domain Description: YeeA Location: 7326-8106 bp Feature: gene Location: 8244-10115 bp Feature: domain Description: DUF262 Location: 8292-9060 bp Feature: domain Description: DUF262 Location: 8292-9060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)