myRT

myRT report for GCA_004795665.1_ASM479566v1

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Seq: SSDD01000002.1 (482020 bp)
Overview 1 RT 1: 396916-407649 bp 2 RT 2: 423907-432727 bp Neighborhood of RT #1 [396916, 407651] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [423907, 432756] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 396916-397131 bp Feature: domain Description: NERD Location: 396943-397066 bp Feature: domain Description: NERD Location: 396943-397066 bp Feature: gene Location: 397344-398465 bp Feature: domain Description: COG3177 Location: 397362-398454 bp Feature: domain Description: COG31 77 Location: 397362-398454 bp Feature: gene Location: 399188-400873 bp Feature: domain Description: RVT_N Location: 399245-399485 bp Feature: domain Description: RVT_N Location: 399245-399485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399533-400169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399533-4001 69 bp Feature: domain Description: GIIM Note: maturase Location: 400223-400454 bp Feature: domain Description: GIIM Note: maturase Location: 400223-400454 bp Feature: domain Description: HNH Note: nucleases Location: 400706-400844 bp Feature: domain Description: HNH Note: nucleases Location: 400706-400844 bp Feature: gene Location: 401954-405691 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 402062-402719 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 402062-40271 9 bp Feature: domain Description: PRK09776 Location: 402932-403403 bp Feature: domain Description: PRK09776 Location: 402932-403403 bp Feature: domain Description: PAS Location: 403460-403985 bp Feature: domain Description: PAS Location: 403460-403985 bp Feature: domain Description: PRK10060 Location: 403997-405641 bp Feature: domain Description: PRK1 0060 Location: 403997-405641 bp Feature: gene Location: 405798-407651 bp Feature: domain Description: PRK05658 Location: 405810-407649 bp Feature: domain Description: PRK05658 Location: 40581 0-407649 bp Feature: gene Location: 423907-425121 bp Feature: domain Description: PRK10770 Location: 423919-425113 bp Feature: domain Description: PRK1 0770 Location: 42391 9-4251 1 3 bp Feature: gene Location: 425180-427951 bp Feature: domain Description: LptD Location: 425375-427937 bp Feature: domain Description: LptD Location: 425375-427937 bp Feature: gene Location: 428084-429796 bp Feature: domain Description: RVT_N Location: 428141-428384 bp Feature: domain Description: RVT_N Location: 4281 41 -428384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428429-429065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428429-429065 bp Feature: domain Description: YkfC Location: 429275-429425 bp Feature: domain Description: YkfC Location: 429275-429425 bp Feature: domain Description: HNH Note: nucleases Location: 429602-429740 bp Feature: domain Description: HNH Note: nucleases Location: 429602-429740 bp Feature: gene Location: 431069-432085 bp Feature: domain Description: COG3178 Location: 431072-432071 bp Feature: domain Description: COG31 78 Location: 431 072-432071 bp Feature: gene Location: 432082-432756 bp Feature: domain Description: NTP_transferase_like_1 Location: 432088-432727 bp Feature: domain Description: NTP_transferase_like_1 Location: 432088-432727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: SSDD01000014.1 (184292 bp)
Overview 1 RT 1: 85650-91236 bp Neighborhood of RT #1 [85650, 91236] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85650-86486 bp Feature: domain Description: HDOD Location: 85653-86481 bp Feature: domain Description: HDOD Location: 85653-86481 bp Feature: gene Location: 86587-87531 bp Feature: domain Description: YgfZ Location: 86596-87496 bp Feature: domain Description: YgfZ Location: 86596-87496 bp Feature: gene Location: 89254-90573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89257-89833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 57-89833 bp Feature: domain Description: YkfC Location: 90031-90187 bp Feature: domain Description: YkfC Location: 90031-90187 bp Feature: domain Description: HNH Note: nucleases Location: 90370-90508 bp Feature: domain Description: HNH Note: nucleases Location: 90370-90508 bp Feature: gene Location: 90649-90903 bp Feature: domain Description: SdhE Location: 90655-90895 bp Feature: domain Description: SdhE Location: 90655-90895 bp Feature: gene Location: 91042-91236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: SSDD01000042.1 (35868 bp)
Overview 1 RT 1: 25755-33927 bp Neighborhood of RT #1 [25755, 34121] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25755-27626 bp Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: domain Description: DUF262 Location: 25803 -26571 bp Feature: gene Location: 27630-29411 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: gene Location: 29408-32428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903 -3 03 74 bp Feature: gene Location: 32425-32982 bp Feature: gene Location: 32982-34121 bp Feature: domain Description: AAA_21 Location: 33054-33123 bp Feature: domain Description: AAA_21 Location: 3 3 054-3 3 123 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Feature: domain Description: AAA_21 Location: 3 3 597-3 3 927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: SSDD01000009.1 (259720 bp)
Overview 1 RT 1: 254190-259657 bp Neighborhood of RT #1 [254190, 259657] CHD CHD RVT-GII GIIM Feature: gene Location: 254190-255734 bp Feature: domain Description: CHD Location: 254406-254820 bp Feature: domain Description: CHD Location: 254 4 06-254 820 bp Feature: domain Description: CHD Location: 255048-255537 bp Feature: domain Description: CHD Location: 25504 8-255537 bp Feature: gene Location: 256818-256997 bp Feature: gene Location: 257729-258997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257942-258599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25794 2-258599 bp Feature: domain Description: GIIM Note: maturase Location: 258677-258899 bp Feature: domain Description: GIIM Note: maturase Location: 258677-258899 bp Feature: gene Location: 259490-259657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)