myRT

myRT report for GCA_004796215.1_ASM479621v1

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Seq: SEIG01000149.1 (10507 bp)
Overview 1 RT 1: 1-6262 bp Neighborhood of RT #1 [1, 6429] PHA02517 InsE RVT-UG28 DUF45 COG0610 Feature: gene Location: 1-195 bp Feature: domain Description: PHA02517 Location: 43-190 bp Feature: domain Description: PHA0251 7 Location: 43-1 90 bp Feature: gene Location: 204-527 bp Feature: domain Description: InsE Location: 330-519 bp Feature: domain Description: InsE Location: 330-51 9 bp Feature: gene Location: 661-2157 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 940-1576 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 940-1 576 bp Feature: gene Location: 2424-3134 bp Feature: domain Description: DUF45 Location: 2490-3111 bp Feature: domain Description: DUF45 Location: 2490-31 1 1 bp Feature: gene Location: 3148-6429 bp Feature: domain Description: COG0610 Location: 3175-6262 bp Feature: domain Description: COG061 0 Location: 31 75-6262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-UG28, DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: SEIG01000009.1 (26994 bp)
Overview 1 RT 1: 18699-23369 bp Neighborhood of RT #1 [18699, 23500] AlpA HNHc RVT-UG17 SLATT_5 INT_Rci_Hp1_C Feature: gene Location: 18699-18881 bp Feature: domain Description: AlpA Location: 18705-18879 bp Feature: domain Description: AlpA Location: 18705-18879 bp Feature: gene Location: 19027-20178 bp Feature: domain Description: HNHc Note: nucleases Location: 19234-19372 bp Feature: domain Description: HNHc Note: nucleases Location: 192 34-19372 bp Feature: gene Location: 20288-21652 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 20516-21119 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 0516-2 1119 bp Feature: gene Location: 21652-22251 bp Feature: domain Description: SLATT_5 Location: 21715-22219 bp Feature: domain Description: SLATT_5 Location: 2 1715-2 2 2 19 bp Feature: gene Location: 22631-23500 bp Feature: domain Description: INT_Rci_Hp1_C Location: 22910-23369 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 2 910-2 3369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), HNHc (smart00507), RVT-UG17, SLATT_5 (pfam18160), INT_Rci_Hp1_C (cd00796)