myRT

myRT report for GCA_004798955.1_ASM479895v1

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Seq: MWQO01000072.1 (15273 bp)
Overview 1 RT 1: 162-3105 bp Neighborhood of RT #1 [162, 3105] RVT-Retrons HTH_XRE Feature: gene Location: 162-1379 bp Feature: gene Location: 1560-2522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1710-2259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 0-2259 bp Feature: gene Location: 2497-2793 bp Feature: domain Description: HTH_XRE Location: 2518-2677 bp Feature: domain Description: HTH_XRE Location: 251 8-2677 bp Feature: gene Location: 2845-3105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: MWQO01000085.1 (763 bp)
Overview 1 RT 1: 3-723 bp Neighborhood of RT #1 [3, 728] RVT-GII Feature: gene Location: 3-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-72 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MWQO01000092.1 (884 bp)
Overview 1 RT 1: 1-616 bp Neighborhood of RT #1 [1, 738] RVT-GII GIIM Feature: gene Location: 1-738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-3 79 bp Feature: domain Description: GIIM Note: maturase Location: 433-616 bp Feature: domain Description: GIIM Note: maturase Location: 43 3 -616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MWQO01000075.1 (2225 bp)
Overview 1 RT 1: 187-1411 bp Neighborhood of RT #1 [187, 1584] RVT-GII GIIM Feature: gene Location: 187-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1135 bp Feature: domain Description: GIIM Note: maturase Location: 1186-1411 bp Feature: domain Description: GIIM Note: maturase Location: 1186-14 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MWQO01000006.1 (126768 bp)
Overview 1 RT 1: 117641-126463 bp Neighborhood of RT #1 [117641, 126468] OmpR PRK10446 RVT_N RVT-GII GIIM HNHc RDD Pilin Feature: gene Location: 117641-118447 bp Feature: domain Description: OmpR Location: 117761-118424 bp Feature: domain Description: OmpR Location: 117761-118424 bp Feature: gene Location: 118718-119713 bp Feature: domain Description: PRK10446 Location: 118841-119705 bp Feature: domain Description: PRK10446 Location: 118841-119705 bp Feature: gene Location: 119803-121428 bp Feature: domain Description: RVT_N Location: 119854-120097 bp Feature: domain Description: RVT_N Location: 11985 4-120097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120142-120766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120142-120766 bp Feature: domain Description: GIIM Note: maturase Location: 120823-121051 bp Feature: domain Description: GIIM Note: maturase Location: 120823-12105 1 bp Feature: domain Description: HNHc Note: nucleases Location: 121237-121408 bp Feature: domain Description: HNHc Note: nucleases Location: 121237-121408 bp Feature: gene Location: 122555-124849 bp Feature: gene Location: 124942-126468 bp Feature: domain Description: RDD Location: 125539-125953 bp Feature: domain Description: RDD Location: 125 5 39-125 95 3 bp Feature: domain Description: Pilin Location: 126148-126463 bp Feature: domain Description: Pilin Location: 126148-126463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), PRK10446 (30S ribosomal protein S6--L-glutamate ligase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RDD (pfam06271), Pilin (pfam00114)

Seq: MWQO01000081.1 (15334 bp)
Overview 1 RT 1: 7844-13176 bp Neighborhood of RT #1 [7844, 13176] FRG RVT-GII GIIM COG4584 rve COG4584 Feature: gene Location: 7844-8716 bp Feature: domain Description: FRG Location: 7946-8330 bp Feature: domain Description: FRG Location: 7946 -8330 bp Feature: gene Location: 8731-9075 bp Feature: gene Location: 9271-10587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9562-10225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956 2-10225 bp Feature: domain Description: GIIM Note: maturase Location: 10294-10507 bp Feature: domain Description: GIIM Note: maturase Location: 10294-10507 bp Feature: gene Location: 10693-12297 bp Feature: domain Description: COG4584 Location: 10756-10879 bp Feature: domain Description: COG4584 Location: 10756 -10879 bp Feature: domain Description: rve Location: 11113-11488 bp Feature: domain Description: rve Location: 11113-11488 bp Feature: domain Description: COG4584 Location: 11689-12142 bp Feature: domain Description: COG4584 Location: 116 89-12142 bp Feature: gene Location: 13033-13176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), rve (pfam00665)