myRT

myRT report for GCA_004803095.1_ASM480309v1

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Seq: SSUG01000015.1 (142362 bp)
Overview 1 RT 1: 25562-28624 bp Neighborhood of RT #1 [25562, 28641] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 25562-26038 bp Feature: domain Description: PRK10724 Location: 25568-26033 bp Feature: domain Description: PRK1 0724 Location: 25568-26033 bp Feature: gene Location: 26149-26631 bp Feature: domain Description: SmpB Location: 26179-26623 bp Feature: domain Description: SmpB Location: 261 79-26623 bp Feature: gene Location: 27246-28019 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27381-27834 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 27381 -27834 bp Feature: gene Location: 27988-28176 bp Feature: gene Location: 28423-28641 bp Feature: domain Description: PRK09678 Location: 28426-28624 bp Feature: domain Description: PRK09678 Location: 28426-28624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: SSUG01000056.1 (6702 bp)
Overview 1 RT 1: 3243-6157 bp Neighborhood of RT #1 [3243, 6157] RVT-Retrons CspC Feature: gene Location: 3243-3620 bp Feature: gene Location: 4254-4436 bp Feature: gene Location: 4458-5597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4602-5157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4602 -5157 bp Feature: gene Location: 5602-5805 bp Feature: domain Description: CspC Location: 5605-5800 bp Feature: domain Description: CspC Location: 5605-5800 bp Feature: gene Location: 6014-6157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)

Seq: SSUG01000085.1 (981 bp)
Overview 1 RT 1: 347-980 bp Neighborhood of RT #1 [347, 979] RVT-GII Feature: gene Location: 347-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SSUG01000090.1 (910 bp)
Overview 1 RT 1: 1-460 bp Neighborhood of RT #1 [1, 852] RVT-GII Feature: gene Location: 1-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SSUG01000050.1 (9646 bp)
Overview 1 RT 1: 5323-9637 bp Neighborhood of RT #1 [5323, 9645] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 5323-5625 bp Feature: domain Description: InsE Location: 5332-5614 bp Feature: domain Description: InsE Location: 5 332-5 614 bp Feature: gene Location: 5652-6077 bp Feature: domain Description: PHA02517 Location: 5676-6012 bp Feature: domain Description: PHA025 17 Location: 5 676-6012 bp Feature: gene Location: 6669-8192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6942-7674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6942-7674 bp Feature: domain Description: GIIM Note: maturase Location: 7749-7947 bp Feature: domain Description: GIIM Note: maturase Location: 7749-7947 bp Feature: gene Location: 8357-8515 bp Feature: domain Description: PHA02517 Location: 8360-8480 bp Feature: domain Description: PHA025 17 Location: 8360-8480 bp Feature: gene Location: 8734-9645 bp Feature: domain Description: COG3547 Location: 8773-9637 bp Feature: domain Description: COG35 47 Location: 8773-9637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )