myRT

myRT report for GCA_004803325.1_ASM480332v1

Download annotations/find similar RTs

Seq: SSUM01000022.1 (82736 bp)
Overview 1 RT 1: 26837-29858 bp Neighborhood of RT #1 [26837, 29875] SmpB RVT-UG11 PRK09678 Feature: gene Location: 26837-27250 bp Feature: gene Location: 27382-27864 bp Feature: domain Description: SmpB Location: 27412-27856 bp Feature: domain Description: SmpB Location: 2741 2-27856 bp Feature: gene Location: 28480-29253 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 28615-29068 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2861 5-29068 bp Feature: gene Location: 29222-29410 bp Feature: gene Location: 29657-29875 bp Feature: domain Description: PRK09678 Location: 29660-29858 bp Feature: domain Description: PRK09678 Location: 29660-29858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: SSUM01000002.1 (432562 bp)
Overview 1 RT 1: 317969-324822 bp Neighborhood of RT #1 [317969, 324839] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 317969-318634 bp Feature: domain Description: INT_P4_C Location: 318074-318632 bp Feature: domain Description: INT_P4_C Location: 318074-318632 bp Feature: gene Location: 318895-319335 bp Feature: domain Description: Integrase_1 Location: 318901-319117 bp Feature: domain Description: Integrase_1 Location: 318901-319117 bp Feature: gene Location: 319392-321470 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319800-320244 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319800-32 02 44 bp Feature: gene Location: 321470-324079 bp Feature: domain Description: FimD Location: 321527-324068 bp Feature: domain Description: FimD Location: 32 152 7-32 4068 bp Feature: gene Location: 324111-324839 bp Feature: domain Description: FimC Location: 324159-324822 bp Feature: domain Description: FimC Location: 32 4159-32 482 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: SSUM01000082.1 (1350 bp)
Overview 1 RT 1: 347-1349 bp Neighborhood of RT #1 [347, 1348] RVT-GII Feature: gene Location: 347-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-13 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII