myRT

myRT report for GCA_004923095.1_ASM492309v1

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Seq: SETN01000010.1 (58721 bp)
Overview 1 RT 1: 49098-52368 bp Neighborhood of RT #1 [49098, 52382] RVT-GII PRK10276 Feature: gene Location: 49098-49313 bp Feature: gene Location: 49580-49810 bp Feature: gene Location: 50044-51555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50449-51163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50449-51 1 63 bp Feature: gene Location: 51606-51839 bp Feature: gene Location: 51957-52382 bp Feature: domain Description: PRK10276 Location: 51960-52368 bp Feature: domain Description: PRK1 0276 Location: 51 960-52368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: SETN01000061.1 (6330 bp)
Overview 1 RT 1: 239-1988 bp Neighborhood of RT #1 [239, 2053] RVT-GII PHA02517 Feature: gene Location: 239-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 -968 bp Feature: gene Location: 990-1415 bp Feature: gene Location: 1628-2053 bp Feature: domain Description: PHA02517 Location: 1652-1988 bp Feature: domain Description: PHA02 517 Location: 1652 -1988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: SETN01000020.1 (175992 bp)
Overview 1 RT 1: 71812-78913 bp Neighborhood of RT #1 [71812, 78913] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 71812-72288 bp Feature: domain Description: HTH_23 Location: 71890-72031 bp Feature: domain Description: HTH_23 Location: 71890-7203 1 bp Feature: gene Location: 72709-73578 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 73231-73402 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 73 23 1-73 402 bp Feature: gene Location: 74234-75334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74414-74948 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74414-74948 bp Feature: gene Location: 75449-77725 bp Feature: domain Description: AAA_15 Location: 75482-76490 bp Feature: domain Description: AAA_15 Location: 75482-76490 bp Feature: gene Location: 78608-78913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: SETN01000057.1 (10681 bp)
Overview 1 RT 1: 6014-10679 bp Neighborhood of RT #1 [6014, 10678] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 6014-6979 bp Feature: domain Description: ArdC Location: 6140-6974 bp Feature: domain Description: ArdC Location: 614 0-6974 bp Feature: gene Location: 7111-7380 bp Feature: gene Location: 7449-8936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7854-8544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7854 -854 4 bp Feature: gene Location: 9342-9773 bp Feature: domain Description: PRK10276 Location: 9393-9756 bp Feature: domain Description: PRK10276 Location: 9393-9756 bp Feature: gene Location: 9773-10678 bp Feature: domain Description: umuC Location: 9776-10679 bp Feature: domain Description: umuC Location: 9776-10679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: SETN01000016.1 (393181 bp)
Overview 1 RT 1: 364369-367443 bp Neighborhood of RT #1 [364369, 367448] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 364369-364587 bp Feature: domain Description: PRK09678 Location: 364372-364570 bp Feature: domain Description: PRK09678 Location: 364372-3645 70 bp Feature: gene Location: 364834-365022 bp Feature: gene Location: 365465-365764 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 365468-365579 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 365 468-365 5 79 bp Feature: gene Location: 366379-366861 bp Feature: domain Description: SmpB Location: 366409-366853 bp Feature: domain Description: SmpB Location: 366409-36685 3 bp Feature: gene Location: 367011-367448 bp Feature: domain Description: PRK10724 Location: 367014-367443 bp Feature: domain Description: PRK10724 Location: 367014-367443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: SETN01000066.1 (3497 bp)
Overview 1 RT 1: 1-2484 bp Neighborhood of RT #1 [1, 2600] Phage_integrase RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 1-189 bp Feature: domain Description: Phage_integrase Location: 4-85 bp Feature: domain Description: Phage_integrase Location: 4-85 bp Feature: gene Location: 182-982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 0-46 4 bp Feature: domain Description: GIIM Note: maturase Location: 539-758 bp Feature: domain Description: GIIM Note: maturase Location: 539-758 bp Feature: gene Location: 1147-1305 bp Feature: domain Description: PHA02517 Location: 1150-1270 bp Feature: domain Description: PHA02517 Location: 1150-1270 bp Feature: gene Location: 1524-2600 bp Feature: domain Description: COG3547 Location: 1563-2484 bp Feature: domain Description: COG3547 Location: 156 3-2484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )