myRT

myRT report for GCA_004962735.1_ASM496273v1

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Seq: SUGR01000067.1 (19598 bp)
Overview 1 RT 1: 11089-15498 bp Neighborhood of RT #1 [11089, 15959] DDE_Tnp_1_4 Methyltransf_21 RVT-GII GIIM DEDD_Tnp_IS110 Recombinase Zn_ribbon_recom Feature: gene Location: 11089-11961 bp Feature: domain Description: DDE_Tnp_1_4 Location: 11095-11956 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 1 095-1 1 956 bp Feature: gene Location: 12298-13023 bp Ori: TIP69690.1 Feature: domain Description: Methyltransf_21 Location: 12487-12973 bp Feature: domain Description: Methyltransf_21 Location: 1 2487-1 2973 bp Feature: gene Location: 13433-14266 bp Ori: TIP69691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13532-13874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3532-1 3874 bp Feature: domain Description: GIIM Note: maturase Location: 13961-14189 bp Feature: domain Description: GIIM Note: maturase Location: 1 3961 -1 41 89 bp Feature: gene Location: 14168-14641 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 14183-14411 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 41 83-1 441 1 bp Feature: gene Location: 14790-15959 bp Ori: TIP69692.1 Feature: domain Description: Recombinase Location: 14943-15282 bp Feature: domain Description: Recombinase Location: 1 4943-1 5282 bp Feature: domain Description: Zn_ribbon_recom Location: 15342-15498 bp Feature: domain Description: Zn_ribbon_recom Location: 1 5342-1 5498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), Methyltransf_21 (pfam05050), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: SUGR01000086.1 (11764 bp)
Overview 1 RT 1: 1-5959 bp Neighborhood of RT #1 [1, 5976] COG3547 RVT-GII GIIM PepP AmpC Feature: gene Location: 1-479 bp Feature: gene Location: 991-1926 bp Feature: domain Description: COG3547 Location: 1402-1924 bp Feature: domain Description: COG3547 Location: 1402 -192 4 bp Feature: gene Location: 2008-3528 bp Ori: TIP69352.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2314-3076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 314-3076 bp Feature: domain Description: GIIM Note: maturase Location: 3145-3361 bp Feature: domain Description: GIIM Note: maturase Location: 3145-3361 bp Feature: gene Location: 4301-5491 bp Ori: TIP69353.1 Feature: domain Description: PepP Location: 4364-5462 bp Feature: domain Description: PepP Location: 4364-5462 bp Feature: gene Location: 5608-5976 bp Ori: TIP69354.1 Feature: domain Description: AmpC Location: 5716-5959 bp Feature: domain Description: AmpC Location: 5716-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PepP (COG0006), AmpC (COG1680)

Seq: SUGR01000025.1 (104194 bp)
Overview 1 RT 1: 76684-82025 bp Neighborhood of RT #1 [76684, 82903] Endonuclease_DUF559 YjdI COG3369 COG3369 RVT-UG12 LepA Tad Feature: gene Location: 76684-77058 bp Ori: TIP72189.1 Feature: domain Description: Endonuclease_DUF559 Location: 76714-77026 bp Feature: domain Description: Endonuclease_DUF559 Location: 76714-77026 bp Feature: gene Location: 77166-77792 bp Ori: TIP72190.1 Feature: domain Description: YjdI Location: 77181-77373 bp Feature: domain Description: YjdI Location: 77181-773 73 bp Feature: domain Description: COG3369 Location: 77379-77622 bp Feature: domain Description: COG3 3 69 Location: 773 79-77622 bp Feature: domain Description: COG3369 Location: 77637-77790 bp Feature: domain Description: COG3 3 69 Location: 7763 7-77790 bp Feature: gene Location: 77935-79812 bp Ori: TIP72191.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 78553-79006 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 78553 -79006 bp Feature: gene Location: 79884-81689 bp Ori: TIP72192.1 Gene: lepA Feature: domain Description: LepA Location: 79893-81684 bp Feature: domain Description: LepA Location: 79893 -81684 bp Feature: gene Location: 81854-82903 bp Ori: TIP72193.1 Feature: domain Description: Tad Location: 81896-82025 bp Feature: domain Description: Tad Location: 81896-82025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Endonuclease_DUF559 (cd01038), YjdI (COG3592), COG3369 (Uncharacterized protein, contains Zn-finger domain of CDGSH type ), RVT-UG12, LepA (COG0481), Tad (pfam13400)