myRT

myRT report for GCA_004962945.1_ASM496294v1

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Seq: SUGP01000024.1 (90445 bp)
Overview 1 RT 1: 62935-68276 bp Neighborhood of RT #1 [62935, 69154] Endonuclease_DUF559 YjdI COG3369 COG3369 RVT-UG12 LepA Tad Feature: gene Location: 62935-63309 bp Ori: TIR50207.1 Feature: domain Description: Endonuclease_DUF559 Location: 62965-63277 bp Feature: domain Description: Endonuclease_DUF559 Location: 62965-63277 bp Feature: gene Location: 63417-64043 bp Ori: TIR50208.1 Feature: domain Description: YjdI Location: 63432-63624 bp Feature: domain Description: YjdI Location: 63432-63624 bp Feature: domain Description: COG3369 Location: 63630-63873 bp Feature: domain Description: COG3369 Location: 63630-63873 bp Feature: domain Description: COG3369 Location: 63888-64041 bp Feature: domain Description: COG3369 Location: 63888-64041 bp Feature: gene Location: 64186-66063 bp Ori: TIR50209.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 64804-65257 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 64804-65257 bp Feature: gene Location: 66135-67940 bp Ori: TIR50210.1 Gene: lepA Feature: domain Description: LepA Location: 66144-67935 bp Feature: domain Description: LepA Location: 661 44-67935 bp Feature: gene Location: 68105-69154 bp Ori: TIR50211.1 Feature: domain Description: Tad Location: 68147-68276 bp Feature: domain Description: Tad Location: 681 47-68276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Endonuclease_DUF559 (cd01038), YjdI (COG3592), COG3369 (Uncharacterized protein, contains Zn-finger domain of CDGSH type ), RVT-UG12, LepA (COG0481), Tad (pfam13400)

Seq: SUGP01000072.1 (17575 bp)
Overview 1 RT 1: 9066-13475 bp Neighborhood of RT #1 [9066, 13936] DDE_Tnp_1_4 Methyltransf_21 RVT-GII GIIM DEDD_Tnp_IS110 Recombinase Zn_ribbon_recom Feature: gene Location: 9066-9938 bp Feature: domain Description: DDE_Tnp_1_4 Location: 9072-9933 bp Feature: domain Description: DDE_Tnp_1_4 Location: 9072 -9933 bp Feature: gene Location: 10275-11000 bp Ori: TIR47880.1 Feature: domain Description: Methyltransf_21 Location: 10464-10950 bp Feature: domain Description: Methyltransf_2 1 Location: 10464-10950 bp Feature: gene Location: 11410-12243 bp Ori: TIR47881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11509-11851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11509-11851 bp Feature: domain Description: GIIM Note: maturase Location: 11938-12166 bp Feature: domain Description: GIIM Note: maturase Location: 11938-12 166 bp Feature: gene Location: 12145-12618 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 12160-12388 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 12 160-12 388 bp Feature: gene Location: 12767-13936 bp Ori: TIR47882.1 Feature: domain Description: Recombinase Location: 12920-13259 bp Feature: domain Description: Recombinase Location: 12 92 0-132 59 bp Feature: domain Description: Zn_ribbon_recom Location: 13319-13475 bp Feature: domain Description: Zn_ribbon_recom Location: 13319-13475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), Methyltransf_21 (pfam05050), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: SUGP01000063.1 (22859 bp)
Overview 1 RT 1: 15062-19713 bp Neighborhood of RT #1 [15062, 20417] COG3547 RVT-GII GIIM INT_RitB_C_like Phage_int_SAM_1 Feature: gene Location: 15062-16104 bp Feature: domain Description: COG3547 Location: 15077-15848 bp Feature: domain Description: COG3 547 Location: 15077-15848 bp Feature: gene Location: 16233-17229 bp Feature: gene Location: 17316-18836 bp Ori: TIR48056.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17622-18384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17622-183 84 bp Feature: domain Description: GIIM Note: maturase Location: 18453-18669 bp Feature: domain Description: GIIM Note: maturase Location: 18453 -18669 bp Feature: gene Location: 19183-19422 bp Feature: domain Description: INT_RitB_C_like Location: 19186-19372 bp Feature: domain Description: INT_RitB_C_like Location: 19186-193 72 bp Feature: gene Location: 19419-20417 bp Feature: domain Description: Phage_int_SAM_1 Location: 19464-19713 bp Feature: domain Description: Phage_int_SAM_1 Location: 19464-19713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899)