myRT

myRT report for GCA_005047355.1_ASM504735v1

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Seq: SUMC01000160.1 (11683 bp)
Overview 1 RT 1: 7929-11416 bp Neighborhood of RT #1 [7929, 11682] PRK07041 MFS_MdtH_MDR_like RVT-GII GIIM Phage_integrase Feature: gene Location: 7929-8633 bp Feature: domain Description: PRK07041 Location: 7944-8619 bp Feature: domain Description: PRK07041 Location: 7944-861 9 bp Feature: gene Location: 8657-9214 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 8912-9188 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 891 2-91 88 bp Feature: gene Location: 9202-9936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205-9550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205-9550 bp Feature: domain Description: GIIM Note: maturase Location: 9634-9853 bp Feature: domain Description: GIIM Note: maturase Location: 9634-9853 bp Feature: gene Location: 9940-11682 bp Feature: domain Description: Phage_integrase Location: 10864-11416 bp Feature: domain Description: Phage_integrase Location: 1 0864-1 1 41 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07041 (SDR family oxidoreductase), MFS_MdtH_MDR_like (cd17329), RVT-GII, GIIM (pfam08388), Phage_integrase (pfam00589)

Seq: SUMC01000369.1 (894 bp)
Overview 1 RT 1: 50-797 bp Neighborhood of RT #1 [50, 865] RVT_N RVT-GII Feature: gene Location: 50-865 bp Feature: domain Description: RVT_N Location: 125-362 bp Feature: domain Description: RVT_N Location: 12 5-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 -797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SUMC01000112.1 (23121 bp)
Overview 1 RT 1: 3-2019 bp Neighborhood of RT #1 [3, 2019] RVT-GII GIIM Imm8 Feature: gene Location: 3-152 bp Feature: gene Location: 381-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 84-549 bp Feature: domain Description: GIIM Note: maturase Location: 606-834 bp Feature: domain Description: GIIM Note: maturase Location: 606-83 4 bp Feature: gene Location: 1409-1762 bp Feature: domain Description: Imm8 Location: 1421-1751 bp Feature: domain Description: Imm8 Location: 1421-1751 bp Feature: gene Location: 1759-2019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Imm8 (pfam15586)

Seq: SUMC01000137.1 (17162 bp)
Overview 1 RT 1: 13900-16705 bp Neighborhood of RT #1 [13900, 16806] DDE_Tnp_Tn3 HTH_32 rve_3 RVT-GII GIIM Feature: gene Location: 13900-14208 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 14014-14140 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 14 014 -14 14 0 bp Feature: gene Location: 14749-15783 bp Feature: domain Description: HTH_32 Location: 14935-15145 bp Feature: domain Description: HTH_32 Location: 14 935-1514 5 bp Feature: domain Description: rve_3 Location: 15478-15673 bp Feature: domain Description: rve_3 Location: 154 78-15673 bp Feature: gene Location: 16267-16806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16276-16405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16276-164 05 bp Feature: domain Description: GIIM Note: maturase Location: 16483-16705 bp Feature: domain Description: GIIM Note: maturase Location: 164 83-16705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), HTH_32 (pfam13565), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)

Seq: SUMC01000064.1 (44778 bp)
Overview 1 RT 1: 28023-31882 bp Neighborhood of RT #1 [28023, 31899] MarR RVT-GII GIIM COG2343 AcrR Feature: gene Location: 28023-28439 bp Feature: domain Description: MarR Location: 28098-28425 bp Feature: domain Description: MarR Location: 28098-28425 bp Feature: gene Location: 28740-29336 bp Feature: gene Location: 29008-30012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-29554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-295 5 4 bp Feature: domain Description: GIIM Note: maturase Location: 29626-29851 bp Feature: domain Description: GIIM Note: maturase Location: 29626-2985 1 bp Feature: gene Location: 30455-30898 bp Feature: domain Description: COG2343 Location: 30578-30893 bp Feature: domain Description: COG2343 Location: 305 78-30893 bp Feature: gene Location: 31300-31899 bp Feature: domain Description: AcrR Location: 31324-31882 bp Feature: domain Description: AcrR Location: 31324-31882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), RVT-GII, GIIM (pfam08388), COG2343 (Uncharacterized conserved protein, DUF427 family ), AcrR (COG1309)

Seq: SUMC01000069.1 (40040 bp)
Overview 1 RT 1: 3-3797 bp Neighborhood of RT #1 [3, 3797] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-230 bp Feature: gene Location: 324-2528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1797 bp Feature: domain Description: Intron_maturas2 Location: 1902-2136 bp Feature: domain Description: Intron_maturas2 Location: 1902-2136 bp Feature: domain Description: HNHc Note: nucleases Location: 2322-2487 bp Feature: domain Description: HNHc Note: nucleases Location: 2322-2487 bp Feature: gene Location: 2629-3006 bp Feature: gene Location: 3159-3797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SUMC01000246.1 (4052 bp)
Overview 1 RT 1: 2930-4036 bp Neighborhood of RT #1 [2930, 4050] RVT-GII Feature: gene Location: 2930-3445 bp Feature: gene Location: 3525-3833 bp Feature: gene Location: 3901-4050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928-4036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928-4036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SUMC01000132.1 (17893 bp)
Overview 1 RT 1: 3-3283 bp Neighborhood of RT #1 [3, 3351] RVT-GII WHTH_GntR IclR HTH_Hin_like HTH_23 HTH_23 Feature: gene Location: 3-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-8 79 bp Feature: gene Location: 1352-2770 bp Feature: domain Description: WHTH_GntR Location: 1841-1904 bp Feature: domain Description: WHTH_GntR Location: 18 41-1904 bp Feature: domain Description: IclR Location: 2165-2336 bp Feature: domain Description: IclR Location: 2165-2336 bp Feature: gene Location: 2767-3351 bp Feature: domain Description: HTH_Hin_like Location: 2824-2902 bp Feature: domain Description: HTH_Hin_like Location: 28 24-2902 bp Feature: domain Description: HTH_23 Location: 2986-3094 bp Feature: domain Description: HTH_23 Location: 298 6-3094 bp Feature: domain Description: HTH_23 Location: 3205-3283 bp Feature: domain Description: HTH_23 Location: 3205-328 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, WHTH_GntR (cd07377), IclR (pfam01614), HTH_Hin_like (cd00569), HTH_23 (pfam13384)

Seq: SUMC01000250.1 (3815 bp)
Overview 1 RT 1: 30-3434 bp Neighborhood of RT #1 [30, 3434] RVT-GII GIIM RVT-GII GIIM HTH_32 rve Feature: gene Location: 30-377 bp Feature: gene Location: 36-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-771 bp Feature: domain Description: GIIM Note: maturase Location: 849-1071 bp Feature: domain Description: GIIM Note: maturase Location: 849 -1071 bp Feature: gene Location: 1211-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1412 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 149 6-1718 bp Feature: gene Location: 1981-3072 bp Feature: domain Description: HTH_32 Location: 2224-2434 bp Feature: domain Description: HTH_32 Location: 2224-2434 bp Feature: domain Description: rve Location: 2500-2848 bp Feature: domain Description: rve Location: 2500-2848 bp Feature: gene Location: 3102-3434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665)

Seq: SUMC01000191.1 (8087 bp)
Overview 1 RT 1: 202-2709 bp Neighborhood of RT #1 [202, 2753] RVT-GII HTH_XRE Feature: gene Location: 202-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-898 bp Feature: gene Location: 1481-1714 bp Feature: gene Location: 2436-2753 bp Feature: domain Description: HTH_XRE Location: 2553-2709 bp Feature: domain Description: HTH_XRE Location: 2553-2709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_XRE (smart00530)

Seq: SUMC01000046.1 (64354 bp)
Overview 1 RT 1: 59362-64108 bp Neighborhood of RT #1 [59362, 64212] Methyltransf_23 DDE_Tnp_ISAZ013 RVT-GII GIIM HTH_Tnp_4 Feature: gene Location: 59362-60537 bp Feature: domain Description: Methyltransf_23 Location: 59833-60235 bp Feature: domain Description: Methyltransf_23 Location: 59833-60235 bp Feature: gene Location: 60461-61600 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 60656-61568 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 60656-61568 bp Feature: gene Location: 62166-63596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62487-63171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62487-63171 bp Feature: domain Description: GIIM Note: maturase Location: 63249-63471 bp Feature: domain Description: GIIM Note: maturase Location: 63249-63471 bp Feature: gene Location: 63829-64212 bp Feature: domain Description: HTH_Tnp_4 Location: 63961-64108 bp Feature: domain Description: HTH_Tnp_4 Location: 63961-64108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_23 (pfam13489), DDE_Tnp_ISAZ013 (pfam07592), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613)

Seq: SUMC01000104.1 (24802 bp)
Overview 1 RT 1: 21559-24220 bp Neighborhood of RT #1 [21559, 24264] rve_3 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21559-21735 bp Feature: gene Location: 21851-22447 bp Feature: domain Description: rve_3 Location: 22160-22352 bp Feature: domain Description: rve_3 Location: 22160-22352 bp Feature: gene Location: 22480-24264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22741-23539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22741-23539 bp Feature: domain Description: Intron_maturas2 Location: 23653-23872 bp Feature: domain Description: Intron_maturas2 Location: 23653-23872 bp Feature: domain Description: HNHc Note: nucleases Location: 24058-24220 bp Feature: domain Description: HNHc Note: nucleases Location: 24058-24220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SUMC01000232.1 (4884 bp)
Overview 1 RT 1: 210-2501 bp Neighborhood of RT #1 [210, 2501] RVT-GII GIIM HNH Feature: gene Location: 210-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-405 bp Feature: domain Description: GIIM Note: maturase Location: 456-690 bp Feature: domain Description: GIIM Note: maturase Location: 456-690 bp Feature: domain Description: HNH Note: nucleases Location: 1014-1116 bp Feature: domain Description: HNH Note: nucleases Location: 1014-1116 bp Feature: gene Location: 1408-2079 bp Feature: gene Location: 2103-2501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: SUMC01000216.1 (6118 bp)
Overview 1 RT 1: 2-5838 bp Neighborhood of RT #1 [2, 5838] RVT-GII GIIM RVT-GII RVT-GII GIIM group_II_RT_mat Feature: gene Location: 2-142 bp Feature: gene Location: 170-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-779 bp Feature: gene Location: 910-1137 bp Feature: gene Location: 1374-2045 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1980 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1980 bp Feature: gene Location: 1657-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-2581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-2581 bp Feature: gene Location: 3158-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374-4037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374-4037 bp Feature: domain Description: GIIM Note: maturase Location: 4115-4352 bp Feature: domain Description: GIIM Note: maturase Location: 4115-4352 bp Feature: gene Location: 5233-5424 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5281-5395 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5281-5395 bp Feature: gene Location: 5599-5838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: SUMC01000074.1 (36455 bp)
Overview 1 RT 1: 26168-31671 bp Neighborhood of RT #1 [26168, 31671] rve_3 RVT-GII GIIM NOS_oxygenase_prok Feature: gene Location: 26168-26419 bp Feature: gene Location: 26443-26706 bp Feature: domain Description: rve_3 Location: 26449-26602 bp Feature: domain Description: rve_3 Location: 26449-26602 bp Feature: gene Location: 27535-28794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27751-28411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27751-28411 bp Feature: domain Description: GIIM Note: maturase Location: 28492-28711 bp Feature: domain Description: GIIM Note: maturase Location: 28492-28711 bp Feature: gene Location: 29942-31228 bp Feature: domain Description: NOS_oxygenase_prok Location: 30140-31187 bp Feature: domain Description: NOS_oxygenase_prok Location: 30140-31187 bp Feature: gene Location: 31444-31671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, GIIM (pfam08388), NOS_oxygenase_prok (cd00794)

Seq: SUMC01000005.1 (294059 bp)
Overview 1 RT 1: 30627-38239 bp Neighborhood of RT #1 [30627, 38239] RVT-GII GIIM DDE_Tnp_ISAZ013 Feature: gene Location: 30627-31187 bp Feature: gene Location: 32683-33303 bp Feature: gene Location: 33659-35038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33977-34607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33977-34607 bp Feature: domain Description: GIIM Note: maturase Location: 34691-34901 bp Feature: domain Description: GIIM Note: maturase Location: 34691-34901 bp Feature: gene Location: 35744-36295 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 35750-35867 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 35750-35867 bp Feature: gene Location: 38102-38239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_ISAZ013 (pfam07592)

Seq: SUMC01000290.1 (2319 bp)
Overview 1 RT 1: 456-1779 bp Neighborhood of RT #1 [456, 2210] RVT_N RVT-GII GIIM Feature: gene Location: 456-2210 bp Feature: domain Description: RVT_N Location: 537-774 bp Feature: domain Description: RVT_N Location: 537-774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834-1491 bp Feature: domain Description: GIIM Note: maturase Location: 1551-1779 bp Feature: domain Description: GIIM Note: maturase Location: 1551-17 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SUMC01000291.1 (2303 bp)
Overview 1 RT 1: 1-2227 bp Neighborhood of RT #1 [1, 2301] RVT-GII GIIM RVT-GII RVT-GII GIIM Feature: gene Location: 1-288 bp Feature: gene Location: 337-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-709 bp Feature: domain Description: GIIM Note: maturase Location: 787-1003 bp Feature: domain Description: GIIM Note: maturase Location: 787-1003 bp Feature: gene Location: 1100-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148-1373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148-1373 bp Feature: gene Location: 1525-2301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618-1924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618 -1924 bp Feature: domain Description: GIIM Note: maturase Location: 2002-2227 bp Feature: domain Description: GIIM Note: maturase Location: 2002-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)