myRT

myRT report for GCA_005047385.1_ASM504738v1

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Seq: SUKT01000068.1 Shigella sonnei strain 10 (B) GCID_STAPE_0035_NODE_126.ctg_1, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 92-2271 bp Neighborhood of RT #1 [92, 2271] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1 097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72-1 370 bp Feature: gene Location: 1909-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SUKT01000063.1 Shigella sonnei strain 10 (B) GCID_STAPE_0035_NODE_16.ctg_1, whole genome shotgun sequence (111568 bp)
Overview 1 RT 1: 82553-88584 bp Neighborhood of RT #1 [82553, 88584] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 82553-83473 bp Feature: domain Description: AbiEii Location: 82595-83336 bp Feature: domain Description: AbiEii Location: 82 595-83336 bp Feature: gene Location: 83460-84263 bp Feature: domain Description: AbiEi_3_N Location: 83493-83754 bp Feature: domain Description: AbiEi_3_N Location: 83493-83754 bp Feature: domain Description: AbiEi_3 Location: 83766-84222 bp Feature: domain Description: AbiEi_3 Location: 83766-842 2 2 bp Feature: gene Location: 84558-87767 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85086-85575 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85086-85575 bp Feature: domain Description: nitrilase Location: 87081-87678 bp Feature: domain Description: nitrilase Location: 87081-87678 bp Feature: gene Location: 87928-88068 bp Feature: domain Description: Phage_ASH Location: 87955-88048 bp Feature: domain Description: Phage_ASH Location: 87955-88048 bp Feature: gene Location: 88114-88584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: SUKT01000043.1 Shigella sonnei strain 10 (B) GCID_STAPE_0035_NODE_26.ctg_1, whole genome shotgun sequence (56540 bp)
Overview 1 RT 1: 36833-41151 bp Neighborhood of RT #1 [36833, 41151] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 36833-37066 bp Feature: domain Description: DUF905 Location: 36863-37061 bp Feature: domain Description: DUF905 Location: 3 6863 -3 7061 bp Feature: gene Location: 37123-37575 bp Feature: domain Description: PRK13732 Location: 37129-37573 bp Feature: domain Description: PRK13 73 2 Location: 3 7129-3 7573 bp Feature: gene Location: 37770-39671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38037-38868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 803 7-3 8868 bp Feature: domain Description: Intron_maturas2 Location: 38982-39240 bp Feature: domain Description: Intron_maturas2 Location: 3 8982-3 9240 bp Feature: domain Description: HNHc Note: nucleases Location: 39414-39576 bp Feature: domain Description: HNHc Note: nucleases Location: 3 9414-3 9576 bp Feature: gene Location: 40388-40669 bp Feature: gene Location: 40666-41151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SUKT01000207.1 Shigella sonnei strain 10 (B) GCID_STAPE_0035_NODE_39.ctg_1, whole genome shotgun sequence (39145 bp)
Overview 1 RT 1: 18822-22117 bp Neighborhood of RT #1 [18822, 22131] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 18822-19208 bp Feature: domain Description: CdiI_3 Location: 18846-19122 bp Feature: domain Description: CdiI_3 Location: 1884 6-19122 bp Feature: gene Location: 19407-19547 bp Feature: gene Location: 19655-20137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19976-20063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19976-20063 bp Feature: gene Location: 20176-20946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20179-20593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20179-20593 bp Feature: domain Description: GIIM Note: maturase Location: 20644-20809 bp Feature: domain Description: GIIM Note: maturase Location: 2064 4 -20809 bp Feature: gene Location: 21196-21414 bp Feature: gene Location: 21652-22131 bp Feature: domain Description: ArgR Location: 21685-22117 bp Feature: domain Description: ArgR Location: 21685-22117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)

Seq: SUKT01000003.1 Shigella sonnei strain 10 (B) GCID_STAPE_0035_NODE_55.ctg_1, whole genome shotgun sequence (23704 bp)
Overview 1 RT 1: 6956-9988 bp Neighborhood of RT #1 [6956, 9988] RVT-GII GIIM RVT-GII Feature: gene Location: 6956-7126 bp Feature: gene Location: 7264-7410 bp Feature: gene Location: 7509-8030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7515-7797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 15 -7797 bp Feature: domain Description: GIIM Note: maturase Location: 7845-8025 bp Feature: domain Description: GIIM Note: maturase Location: 7845 -8025 bp Feature: gene Location: 8058-8597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8388-8466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8388-8466 bp Feature: gene Location: 8628-8825 bp Feature: gene Location: 9083-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)