myRT

myRT report for GCA_005047875.1_ASM504787v1

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Seq: SURS01000122.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_122_length_14993_cov_11.369460, whole genome shotgun sequence (14993 bp)
Overview 1 RT 1: 1-1435 bp Neighborhood of RT #1 [1, 1435] RVT-GII Feature: gene Location: 1-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09-493 bp Feature: gene Location: 489-713 bp Feature: gene Location: 1280-1435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SURS01000171.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_171_length_10412_cov_8.665251, whole genome shotgun sequence (10412 bp)
Overview 1 RT 1: 3283-7107 bp Neighborhood of RT #1 [3283, 7124] DUF772 DDE_Tnp_1 RVT-GII GIIM Asp_Glu_race Feature: gene Location: 3283-4638 bp Feature: domain Description: DUF772 Location: 3442-3661 bp Feature: domain Description: DUF772 Location: 3442 -3661 bp Feature: domain Description: DDE_Tnp_1 Location: 3877-4555 bp Feature: domain Description: DDE_Tnp_1 Location: 3877-4555 bp Feature: gene Location: 4699-4986 bp Feature: gene Location: 5182-5739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284-5401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 84-5401 bp Feature: domain Description: GIIM Note: maturase Location: 5509-5674 bp Feature: domain Description: GIIM Note: maturase Location: 5509-5674 bp Feature: gene Location: 5792-6064 bp Feature: gene Location: 6372-7124 bp Feature: domain Description: Asp_Glu_race Location: 6447-7107 bp Feature: domain Description: Asp_Glu_race Location: 6447-7107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), Asp_Glu_race (pfam01177)

Seq: SURS01000410.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_412_length_2766_cov_9.569532, whole genome shotgun sequence (2766 bp)
Overview 1 RT 1: 784-2725 bp Neighborhood of RT #1 [784, 2725] IS285 ugpC RVT-GII Feature: gene Location: 784-978 bp Feature: domain Description: IS285 Location: 787-973 bp Feature: domain Description: IS285 Location: 787-973 bp Feature: gene Location: 1215-1598 bp Feature: domain Description: ugpC Location: 1221-1593 bp Feature: domain Description: ugpC Location: 1221-1593 bp Feature: gene Location: 2034-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037-2340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 7-23 40 bp Feature: gene Location: 2522-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), ugpC (PRK11650), RVT-GII

Seq: SURS01000422.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_424_length_2570_cov_10.395229, whole genome shotgun sequence (2570 bp)
Overview 1 RT 1: 681-2562 bp Neighborhood of RT #1 [681, 2567] RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 681-2201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-174 9 bp Feature: domain Description: GIIM Note: maturase Location: 1824-2037 bp Feature: domain Description: GIIM Note: maturase Location: 1824 -2037 bp Feature: gene Location: 2259-2567 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2286-2562 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2286-2562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)

Seq: SURS01000061.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_61_length_26092_cov_14.015862, whole genome shotgun sequence (26092 bp)
Overview 1 RT 1: 24189-25930 bp Neighborhood of RT #1 [24189, 26091] YdeM PRK02304 RVT-GII GIIM Feature: gene Location: 24189-24659 bp Feature: domain Description: YdeM Location: 24204-24651 bp Feature: domain Description: YdeM Location: 24204-2465 1 bp Feature: gene Location: 24703-25248 bp Feature: domain Description: PRK02304 Location: 24724-25240 bp Feature: domain Description: PRK02304 Location: 24724-25 240 bp Feature: gene Location: 25372-26091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25396-25660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 396-25 660 bp Feature: domain Description: GIIM Note: maturase Location: 25711-25930 bp Feature: domain Description: GIIM Note: maturase Location: 25 711-25 930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeM (cd03454), PRK02304 (adenine phosphoribosyltransferase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: SURS01000075.1 Mesorhizobium sp. isolate N.Ca.ET.092.02.1 NODE_75_length_22961_cov_12.720903, whole genome shotgun sequence (22961 bp)
Overview 1 RT 1: 18889-22960 bp Neighborhood of RT #1 [18889, 22960] Pro_racemase DDE_5 RVT-GII GIIM Feature: gene Location: 18889-19887 bp Feature: domain Description: Pro_racemase Location: 18904-19876 bp Feature: domain Description: Pro_racemase Location: 18904-19876 bp Feature: gene Location: 19903-20070 bp Feature: domain Description: DDE_5 Location: 19948-20044 bp Feature: domain Description: DDE_5 Location: 19948-20044 bp Feature: gene Location: 20981-22357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21317-21935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21317-21935 bp Feature: domain Description: GIIM Note: maturase Location: 21983-22214 bp Feature: domain Description: GIIM Note: maturase Location: 21983-22214 bp Feature: gene Location: 22790-22960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pro_racemase (pfam05544), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388)