myRT

myRT report for GCA_005063105.1_ASM506310v1

Download annotations/find similar RTs

Seq: SUBU01000063.1 Mesorhizobium sp. isolate N.Ca.ET.031.02.1 NODE_63_length_30537_cov_12.693655, whole genome shotgun sequence (30537 bp)
Overview 1 RT 1: 56-3578 bp Neighborhood of RT #1 [56, 3619] HTH_Tnp_Tc3_2 RVT-GII GIIM DDE_3 PRK13011 Feature: gene Location: 56-305 bp Feature: domain Description: HTH_Tnp_Tc3_2 Location: 65-185 bp Feature: domain Description: HTH_Tnp_Tc3_2 Location: 65-1 85 bp Feature: gene Location: 389-707 bp Feature: gene Location: 840-2099 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 056-1 704 bp Feature: domain Description: GIIM Note: maturase Location: 1791-2013 bp Feature: domain Description: GIIM Note: maturase Location: 1 791 -201 3 bp Feature: gene Location: 2153-2665 bp Ori: TIV81266.1 Feature: domain Description: DDE_3 Location: 2192-2564 bp Feature: domain Description: DDE_3 Location: 21 92-2564 bp Feature: gene Location: 2735-3619 bp Ori: TIV81267.1 Gene: purU Feature: domain Description: PRK13011 Location: 2741-3578 bp Feature: domain Description: PRK1 301 1 Location: 2741 -3578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_Tc3_2 (pfam01498), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), PRK13011 (formyltetrahydrofolate deformylase; Reviewed)

Seq: SUBU01000227.1 Mesorhizobium sp. isolate N.Ca.ET.031.02.1 NODE_227_length_7540_cov_12.556847, whole genome shotgun sequence (7540 bp)
Overview 1 RT 1: 90-5257 bp Neighborhood of RT #1 [90, 5257] LepA RVT-UG13 Feature: gene Location: 90-1863 bp Gene: lepA Feature: domain Description: LepA Location: 99-939 bp Feature: domain Description: LepA Location: 99-939 bp Feature: gene Location: 2333-4138 bp Ori: TIV77523.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 2735-3209 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 2 735-32 09 bp Feature: gene Location: 4452-4736 bp Feature: gene Location: 4748-5257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LepA (COG0481), RVT-UG13