myRT

myRT report for GCA_005063395.1_ASM506339v1

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Seq: SUDV01000155.1 Mesorhizobium sp. isolate N.Ca.ET.074.03.1 NODE_155_length_2933_cov_4.548992, whole genome shotgun sequence (2933 bp)
Overview 1 RT 1: 3-2930 bp Neighborhood of RT #1 [3, 2930] PinE Zn_ribbon_recom RVT-GII Feature: gene Location: 3-2012 bp Feature: domain Description: PinE Location: 9-678 bp Feature: domain Description: PinE Location: 9-678 bp Feature: domain Description: Zn_ribbon_recom Location: 948-1125 bp Feature: domain Description: Zn_ribbon_recom Location: 948-1 1 25 bp Feature: gene Location: 2023-2241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188-2236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 88-2236 bp Feature: gene Location: 2799-2930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: SUDV01000355.1 Mesorhizobium sp. isolate N.Ca.ET.074.03.1 NODE_355_length_2175_cov_3.900943, whole genome shotgun sequence (2175 bp)
Overview 1 RT 1: 1-2124 bp Neighborhood of RT #1 [1, 2135] RVT_N RVT-GII GIIM AbiEii Feature: gene Location: 1-1290 bp Feature: RT Description: RVT_N Location: 25-226 bp Feature: RT Description: RVT_N Location: 2 5-2 2 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-1063 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1291 bp Feature: domain Description: GIIM Note: maturase Location: 1138-12 91 bp Feature: gene Location: 1896-2135 bp Feature: domain Description: AbiEii Location: 2037-2124 bp Feature: domain Description: AbiEii Location: 2 037-2 12 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843)

Seq: SUDV01000495.1 Mesorhizobium sp. isolate N.Ca.ET.074.03.1 NODE_495_length_1864_cov_4.848535, whole genome shotgun sequence (1864 bp)
Overview 1 RT 1: 128-1863 bp Neighborhood of RT #1 [128, 1862] DUF5372 RVT-GII GIIM DDE_3 Feature: gene Location: 128-403 bp Feature: domain Description: DUF5372 Location: 146-365 bp Feature: domain Description: DUF53 72 Location: 146-3 65 bp Feature: gene Location: 421-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 9-1060 bp Feature: domain Description: GIIM Note: maturase Location: 1141-1363 bp Feature: domain Description: GIIM Note: maturase Location: 1141-13 63 bp Feature: gene Location: 1503-1862 bp Feature: domain Description: DDE_3 Location: 1542-1863 bp Feature: domain Description: DDE_3 Location: 1542-1863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)