myRT

myRT report for GCA_005063435.1_ASM506343v1

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Seq: SUEQ01000015.1 Mesorhizobium sp. isolate N.Ca.ET.099.01.1 NODE_15_length_163503_cov_30.202208, whole genome shotgun sequence (163503 bp)
Overview 1 RT 1: 135367-141559 bp Neighborhood of RT #1 [135367, 141564] DUF2794 YncA RVT-GII RVT-GII GIIM YbhL YbbP Feature: gene Location: 135367-135753 bp Feature: domain Description: DUF2794 Location: 135463-135715 bp Feature: domain Description: DUF2794 Location: 1 35463-1 3571 5 bp Feature: gene Location: 135758-136327 bp Feature: domain Description: YncA Location: 135770-136265 bp Feature: domain Description: YncA Location: 1 35770-1 36265 bp Feature: gene Location: 136456-137532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136777-136978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36777-1 36978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136981-137101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36981 -1 371 01 bp Feature: domain Description: GIIM Note: maturase Location: 137152-137368 bp Feature: domain Description: GIIM Note: maturase Location: 1 371 52-1 37368 bp Feature: gene Location: 138005-138784 bp Feature: domain Description: YbhL Location: 138011-138779 bp Feature: domain Description: YbhL Location: 1 3801 1 -1 38779 bp Feature: gene Location: 139015-141564 bp Feature: domain Description: YbbP Location: 139042-141559 bp Feature: domain Description: YbbP Location: 1 39042-1 41 559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2794 (pfam10984), YncA (COG1247), RVT-GII, GIIM (pfam08388), YbhL (COG0670), YbbP (COG3127)

Seq: SUEQ01000018.1 Mesorhizobium sp. isolate N.Ca.ET.099.01.1 NODE_18_length_115586_cov_21.740566, whole genome shotgun sequence (115586 bp)
Overview 1 RT 1: 52771-58594 bp Neighborhood of RT #1 [52771, 60195] RVT-Retrons Trypsin_2 ParB_N_like Feature: gene Location: 52771-53745 bp Feature: gene Location: 53759-55585 bp Feature: gene Location: 55896-57476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56055-56652 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56055-56652 bp Feature: domain Description: Trypsin_2 Location: 56997-57399 bp Feature: domain Description: Trypsin_2 Location: 56997-57399 bp Feature: gene Location: 57996-58151 bp Feature: gene Location: 58282-60195 bp Feature: domain Description: ParB_N_like Location: 58354-58594 bp Feature: domain Description: ParB_N_like Location: 58354-58594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), ParB_N_like (cd16411)

Seq: SUEQ01000031.1 Mesorhizobium sp. isolate N.Ca.ET.099.01.1 NODE_31_length_68796_cov_32.991021, whole genome shotgun sequence (68796 bp)
Overview 1 RT 1: 49864-53983 bp Neighborhood of RT #1 [49864, 54213] DUF1186 VapI RVT-GII AcrR DUF308 Feature: gene Location: 49864-50370 bp Feature: domain Description: DUF1186 Location: 49870-50269 bp Feature: domain Description: DUF1186 Location: 49870-50269 bp Feature: gene Location: 50391-50699 bp Feature: domain Description: VapI Location: 50400-50676 bp Feature: domain Description: VapI Location: 50400-50676 bp Feature: gene Location: 51306-52670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51603-52293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51603 -52293 bp Feature: gene Location: 52855-53466 bp Feature: domain Description: AcrR Location: 52882-53365 bp Feature: domain Description: AcrR Location: 52882-53 3 65 bp Feature: gene Location: 53533-54213 bp Feature: domain Description: DUF308 Location: 53779-53983 bp Feature: domain Description: DUF3 08 Location: 53 779-53 983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1186 (pfam06685), VapI (COG3093), RVT-GII, AcrR (COG1309), DUF308 (pfam03729)

Seq: SUEQ01000097.1 Mesorhizobium sp. isolate N.Ca.ET.099.01.1 NODE_97_length_2307_cov_131.823318, whole genome shotgun sequence (2307 bp)
Overview 1 RT 1: 705-2061 bp Neighborhood of RT #1 [705, 2225] RVT-GII GIIM Feature: gene Location: 705-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011-1773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011-1773 bp Feature: domain Description: GIIM Note: maturase Location: 1848-2061 bp Feature: domain Description: GIIM Note: maturase Location: 184 8-2061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)