myRT

myRT report for GCA_005116465.1_ASM511646v1

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Seq: SWBM01000019.1 Bacillus kyonggiensis strain NB22 NODE_31_length_3173_cov_0.198558, whole genome shotgun sequence (3173 bp)
Overview 1 RT 1: 1-3087 bp Neighborhood of RT #1 [1, 3173] Integrase_H2C2 rve RVT-UNC RNase_HI_RT_Ty3 RVP_2 zf-CCHC Feature: gene Location: 1-948 bp Ori: TKC13481.1 Feature: domain Description: Integrase_H2C2 Location: 169-337 bp Feature: domain Description: Integrase_H2C2 Location: 1 69-337 bp Feature: domain Description: rve Location: 409-730 bp Feature: domain Description: rve Location: 409-730 bp Feature: gene Location: 988-2178 bp Ori: TKC13482.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1258-1447 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 258-1 447 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1777-2116 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1 777-21 1 6 bp Feature: gene Location: 2097-2846 bp Ori: TKC13483.1 Feature: domain Description: RVP_2 Location: 2100-2472 bp Feature: domain Description: RVP_2 Location: 21 00-2472 bp Feature: gene Location: 2874-3173 bp Ori: TKC13484.1 Feature: domain Description: zf-CCHC Location: 3039-3087 bp Feature: domain Description: zf-CCHC Location: 3039-3087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_H2C2 (pfam17921), rve (pfam00665), RVT-UG11/RVT-G2Lb/RVT-UG26/RVT-UG19(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), RVP_2 (pfam08284), zf-CCHC (pfam00098)

Seq: SWBM01000048.1 Bacillus kyonggiensis strain NB22 NODE_80_length_1439_cov_0.217754, whole genome shotgun sequence (1439 bp)
Overview 1 RT 1: 84-945 bp Neighborhood of RT #1 [84, 1055] RT_LTR RVT-UNC Feature: gene Location: 84-1055 bp Ori: TKC11716.1 Feature: domain Description: RT_LTR Location: 201-375 bp Feature: domain Description: RT_LTR Location: 2 01-375 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 789-945 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 789-945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_LTR (cd01647), RVT-UG11/RVT-UG20/RVT-GII/RVT-UG26(RVT-UNC)

Seq: SWBM01000002.1 Bacillus kyonggiensis strain NB22 NODE_2_length_531924_cov_67.457933, whole genome shotgun sequence (531924 bp)
Overview 1 RT 1: 93644-100674 bp Neighborhood of RT #1 [93644, 100685] Mycoplas_LppA LprI EndA RVT-GII GIIM YncE Gram_pos_anchor SrtA Feature: gene Location: 93644-94282 bp Ori: TKC16724.1 Feature: domain Description: Mycoplas_LppA Location: 93704-93959 bp Feature: domain Description: Mycoplas_LppA Location: 93 704-93 959 bp Feature: domain Description: LprI Location: 94004-94259 bp Feature: domain Description: LprI Location: 94004-94259 bp Feature: gene Location: 95131-96024 bp Ori: TKC16725.1 Feature: domain Description: EndA Location: 95380-96010 bp Feature: domain Description: EndA Location: 953 80-96010 bp Feature: gene Location: 96259-97392 bp Ori: TKC16726.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96319-96940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963 19-96940 bp Feature: domain Description: GIIM Note: maturase Location: 97003-97222 bp Feature: domain Description: GIIM Note: maturase Location: 97003 -97222 bp Feature: gene Location: 97637-100060 bp Ori: TKC16727.1 Feature: domain Description: YncE Location: 98126-98498 bp Feature: domain Description: YncE Location: 98126-98498 bp Feature: domain Description: Gram_pos_anchor Location: 99938-100052 bp Feature: domain Description: Gram_pos_anchor Location: 9993 8-100052 bp Feature: gene Location: 100125-100685 bp Ori: TKC16728.1 Feature: domain Description: SrtA Location: 100239-100674 bp Feature: domain Description: SrtA Location: 10023 9-100674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mycoplas_LppA (TIGR03490), LprI (pfam07007), EndA (COG2356), RVT-GII, GIIM (pfam08388), YncE (COG3391), Gram_pos_anchor (pfam00746), SrtA (COG3764)

Seq: SWBM01000005.1 Bacillus kyonggiensis strain NB22 NODE_5_length_289702_cov_63.510741, whole genome shotgun sequence (289702 bp)
Overview 1 RT 1: 28864-34879 bp Neighborhood of RT #1 [28864, 34932] DUF4179 DUF5643 MhpC RVT-GII GIIM Rick_17kDa_Anti Rick_17kDa_Anti Acetyltransf_1 Feature: gene Location: 28864-29931 bp Ori: TKC15284.1 Feature: domain Description: DUF4179 Location: 28981-29254 bp Feature: domain Description: DUF4 179 Location: 28981-29254 bp Feature: domain Description: DUF5643 Location: 29554-29881 bp Feature: domain Description: DUF564 3 Location: 29554 -29881 bp Feature: gene Location: 30722-31609 bp Ori: TKC15285.1 Feature: domain Description: MhpC Location: 30872-31553 bp Feature: domain Description: MhpC Location: 30872-31553 bp Feature: gene Location: 32164-33438 bp Ori: TKC15286.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32365-32980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32365-32980 bp Feature: domain Description: GIIM Note: maturase Location: 33040-33247 bp Feature: domain Description: GIIM Note: maturase Location: 3304 0-3324 7 bp Feature: gene Location: 33600-33872 bp Ori: TKC15287.1 Feature: domain Description: Rick_17kDa_Anti Location: 33705-33765 bp Feature: domain Description: Rick_17kDa_Anti Location: 33705-33765 bp Feature: domain Description: Rick_17kDa_Anti Location: 33774-33822 bp Feature: domain Description: Rick_17kDa_Anti Location: 33774 -33822 bp Feature: gene Location: 34477-34932 bp Ori: TKC15288.1 Feature: domain Description: Acetyltransf_1 Location: 34603-34879 bp Feature: domain Description: Acetyltransf_1 Location: 34 603-34 879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4179 (pfam13786), DUF5643 (pfam18705), MhpC (COG0596), RVT-GII, GIIM (pfam08388), Rick_17kDa_Anti (pfam05433), Acetyltransf_1 (pfam00583)

Seq: SWBM01000022.1 Bacillus kyonggiensis strain NB22 NODE_40_length_2528_cov_137.982551, whole genome shotgun sequence (2528 bp)
Overview 1 RT 1: 611-2393 bp Neighborhood of RT #1 [611, 2422] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 611-2422 bp Ori: TKC13478.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875 -1706 bp Feature: domain Description: Intron_maturas2 Location: 1784-2138 bp Feature: domain Description: Intron_maturas2 Location: 1784-2138 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2225 -2393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)